Browse Element(s) Details

Os.23342.1.S1_at

Description

gb:AK106742.1
DB_XREF= gi:32991951
TID=Os.23342.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B05, full insert sequence.
FL= gb:AK106742.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g17990	11/11	Phosphatidate cytidylyltransferase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g17960	OsAffx.8290.1.S1_at	11/11	10	+	8770430..8773635	receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os10g17970	Os.26886.1.S1_x_at	8/11	10	+	8775033..8778307	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17970	Os.26886.3.S1_x_at	3/11	10	+	8775033..8778307	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17970	OsAffx.16244.1.S1_x_at	1/11	10	+	8775033..8778307	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980	Os.26886.6.S1_s_at	11/11	10	+	8780577..8784403	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980	Os.26886.2.S1_s_at	9/11	10	+	8780577..8784403	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980	OsAffx.16467.1.S1_at	9/11	10	+	8780577..8784403	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17990	Os.23342.1.S1_at	11/11	10	+	8789197..8795159	Phosphatidate cytidylyltransferase, putative, expressed
LOC_Os10g18010	OsAffx.20536.2.S1_x_at	11/11	10	+	8806862..8807686	hypothetical protein
LOC_Os10g18010	OsAffx.20536.2.S1_at	11/11	10	+	8806862..8807686	hypothetical protein
LOC_Os10g18010	OsAffx.20536.1.S1_x_at	3/11	10	+	8806862..8807686	hypothetical protein
LOC_Os10g18010	OsAffx.20666.1.S1_x_at	1/11	10	+	8806862..8807686	hypothetical protein
LOC_Os10g18010	OsAffx.30370.1.S1_x_at	1/11	10	+	8806862..8807686	hypothetical protein
LOC_Os10g18026	OsAffx.20536.1.S1_at	11/11	10	+	8808006..8811853	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026	OsAffx.20536.1.S1_x_at	11/11	10	+	8808006..8811853	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026	OsAffx.20666.1.S1_x_at	4/11	10	+	8808006..8811853	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026	OsAffx.20536.2.S1_x_at	2/11	10	+	8808006..8811853	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026	OsAffx.30370.1.S1_x_at	1/11	10	+	8808006..8811853	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18042	Os.46306.1.S1_x_at	2/11	10	+	8812471..8814672	transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification

GO id	Type	Name
GO:0008654	biological_process	phospholipid biosynthesis
GO:0016020	cellular_component	membrane
GO:0004605	molecular_function	phosphatidate cytidylyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.23342.1.S1_at--108--595	1	Chr10:8789579..8789603 (25 bp)	GAGCAACTAGGCAAGTTACTGACGA	LOC_Os10g17990
Os.23342.1.S1_at--648--577	1	Chr10:8789559..8789583 (25 bp)	GACGAGAGGGAACTGATGCTAACAT	LOC_Os10g17990
Os.23342.1.S1_at--348--599	1	Chr10:8789533..8789557 (25 bp)	GAGACATCATGCACGAAATCAACAG	LOC_Os10g17990
Os.23342.1.S1_at--731--127	1	Chr10:8789480..8789504 (25 bp)	AGATCATCATGTACAGCCCTAACAC	LOC_Os10g17990
Os.23342.1.S1_at--443--289	1	Chr10:8789398..8789422 (25 bp)	AAGGGTATGATGTTTTCCGAGTATA	LOC_Os10g17990
Os.23342.1.S1_at--890--987	1	Chr10:8789375..8789399 (25 bp)	TACAGGAGTTTGTTCTTGCCTTCTC	LOC_Os10g17990
Os.23342.1.S1_at--1153--943	1	Chr10:8789336..8789360 (25 bp)	TCGGTTTTCATCTTTGTGGCTGCAT	LOC_Os10g17990
Os.23342.1.S1_at--221--301	1	Chr10:8789302..8789326 (25 bp)	AATGAAGGCCCAGTAGCAAACTAGC	LOC_Os10g17990
Os.23342.1.S1_at--300--149	1	Chr10:8789288..8789312 (25 bp)	AGCAAACTAGCAGCCATGACATTTT	LOC_Os10g17990
Os.23342.1.S1_at--255--1057	1	Chr10:8789259..8789283 (25 bp)	TTCTTTCTTGTCGTCGATGGGTTCT	LOC_Os10g17990
Os.23342.1.S1_at--1081--651	1	Chr10:8789211..8789235 (25 bp)	GATATTAATCCCATTATTTCCTTGC	LOC_Os10g17990

Target Sequence

GAGCAACTAGGCAAGTTACTGACGAGAGGGAACTGATGCTAACATAGAGACATCATGCACGAAATCAACAGGACTATGTG
CATTGTTTTTTTTACTTTTAGATCATCATGTACAGCCCTAACACCCTAAAAACAAAAGNATGATAACGCTTAGGATTGTT
TTTTTTTTCCTCGATCGATGTAAGGGTATGATGTTTTCCGAGTATACAGGAGTTTGTTCTTGCCTTCTCTTTNTATTTTT
CTTTCGGTTTTCATCTTTGTGGCTGCATGAGAAGGCAAATGAAGGCCCAGTAGCAAACTAGCAGCCATGACATTTTTTTT
TTCTTTCTTGTCGTCGATGGGTTCTTGACTTCTTGTACTTTGTAGAACGATATTAATCCCATTATTTCCTTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis