Browse Element(s) Details


Os.46597.2.S1_at

Description gb:AK105348.1
DB_XREF= gi:32990557
TID=Os.46597.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0005K07.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A02, full insert sequence.
FL= gb:AK105348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g366207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36580OsAffx.20211.1.S1_at10/1110+19239001..19239689hypothetical protein
LOC_Os10g36590OsAffx.15595.1.S1_at1/1110+19245240..19248197retrotransposon, putative, centromere-specific
LOC_Os10g36600OsAffx.10957.1.S1_x_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36600OsAffx.10957.1.S1_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36610NANA10+19253665..19253934hypothetical protein
LOC_Os10g36620Os.46597.2.S1_at7/1110+19264676..19265368expressed protein
LOC_Os10g36634OsAffx.30691.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36634OsAffx.20209.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36650Os.19742.1.S1_at11/1110+19277241..19281153Actin-2, putative, expressed
LOC_Os10g36660OsAffx.20208.1.S1_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36660OsAffx.20208.1.S1_x_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36670OsAffx.18540.1.S1_at11/1110+19285544..19286365expressed protein
LOC_Os10g36670OsAffx.18540.1.S1_x_at11/1110+19285544..19286365expressed protein
LOC_Os10g36680OsAffx.20207.1.S1_at11/1110+19287802..19288929membrane associated salt-inducible protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0003779molecular_functionactin binding
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46597.2.S1_at--436--1771Chr10:19264940..19264964 (25 bp)
ACCGTGCTTGTAGTCGCCGTCGTTG
LOC_Os10g36620
Os.46597.2.S1_at--1010--7191Chr10:19264922..19264946 (25 bp)
GTCGTTGCAGGTTCAGTCGGATTCA
LOC_Os10g36620
Os.46597.2.S1_at--866--7171Chr10:19264907..19264931 (25 bp)
GTCGGATTCAGGATTTTCAGTCAGG
LOC_Os10g36620
Os.46597.2.S1_at--350--10711Chr10:19264865..19264889 (25 bp)
TTGCTAATCTGTTTCGGGCACTTCG
LOC_Os10g36620
Os.46597.2.S1_at--383--9431Chr10:19264852..19264876 (25 bp)
TCGGGCACTTCGGAACTATTGTAAA
LOC_Os10g36620
Os.46597.2.S1_at--884--2511Chr10:19264783..19264807 (25 bp)
AACTTGTTCGTTCTAGATCAGCTGA
LOC_Os10g36620
Os.46597.2.S1_at--842--751Chr10:19264752..19264776 (25 bp)
ATGTACTCGTGTGCAATCTCTCAAA
LOC_Os10g36620
Os.46597.2.S1_at--860--7091Chr10:19264188..19264212 (25 bp)
GTCAGTTCAACCAACGTGTTCGTCA
NONE
Os.46597.2.S1_at--715--1751Chr10:19264152..19264176 (25 bp)
ACCTCCGGCGAAGTCAGAACTAGCT
NONE
Os.46597.2.S1_at--522--1431Chr10:19264137..19264161 (25 bp)
AGAACTAGCTATGAGTTCGCCGCCT
NONE
Os.46597.2.S1_at--501--9331Chr10:19264111..19264135 (25 bp)
TCGCCGGCGAAGTCGGTTCAACCAA
NONE
Target Sequence 
ACCGTGCTTGTAGTCGCCGTCGTTGCAGGTTCAGTCGGATTCAGGATTTTCAGTCAGGAAGGAAGCTCAAATGATTTGCT
AATCTGTTTCGGGCACTTCGGAACTATTGTAAATTCTTTGCCTTTTGGGGGTTCAAGATTTTCTTTTGCTCATTTCAAAC
TTGTTCGTTCTAGATCAGCTGATGTGTCATGTACTCGTGTGCAATCTCTCAAAAATGTTCATGTACTCAGNNNCAANCTN
TNNNNNNCTANNANNANGNNNTTNGNNCNNNNNGNNNNNGTTNNNNNNNTGGCTGCTCTGTCCACCACCACCTCAAACGC
GCCATCGCCGGTCGCCGTGGCGGCGGGGAGGGCGGTGAGGGCGCCGCCGTCGCCGAAGCCGGCGCCGCCCATAAGGCCGC
TCTTCCGGGCGCCACCACCACCTCCGGCGAGGTCAGTTCAACCAACGTGTTCGTCAGCGCCGCCACCACCTCCGGCGAAG
TCAGAACTAGCTATGAGTTCGCCGCCTCTCGCCGGCGAAGTCGGTTCAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46597.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis