Browse Element(s) Details


Os.4660.1.S1_s_at

Description gb:AK066494.1
DB_XREF= gi:32976512
TID=Os.4660.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072H16, full insert sequence.
FL= gb:AK066494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1086011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10830OsAffx.25046.1.S1_at11/113+5537093..5537856hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_s_at11/113+5546863..5549667hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_at5/113+5546863..5549667hypothetical protein
LOC_Os03g10850Os.14106.1.S1_at10/113+5552488..5555549expressed protein
LOC_Os03g10850OsAffx.12815.1.S1_at2/113+5552488..5555549expressed protein
LOC_Os03g10860Os.4660.1.S1_s_at11/113+5561171..5561827expressed protein
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4660.1.S1_s_at--556--3991Chr03:5561390..5561414 (25 bp)
CGTGGACCGAGAGCATCTGCCTCTG
LOC_Os03g10860
Os.4660.1.S1_s_at--149--3831Chr03:5561368..5561392 (25 bp)
CTGCGCGGGCTTCTAGAAGGTCTCC
LOC_Os03g10860
Os.4660.1.S1_s_at--1125--1451Chr03:5561354..5561378 (25 bp)
AGAAGGTCTCCCTTGTGGGCTTGTG
LOC_Os03g10860
Os.4660.1.S1_s_at--64--10831Chr03:5561334..5561358 (25 bp)
TTGTGGCTGTGGCTTAGCTCGTCCT
LOC_Os03g10860
Os.4660.1.S1_s_at--930--9571Chr03:5561305..5561329 (25 bp)
TCTTCGCGACTTCTCTTTGATTTTT
LOC_Os03g10860
Os.4660.1.S1_s_at--262--10371Chr03:5561266..5561290 (25 bp)
TTTTTCTTTTCTCCGTCTCACTACT
LOC_Os03g10860
Os.4660.1.S1_s_at--73--4031Chr03:5561253..5561277 (25 bp)
CGTCTCACTACTGGGCTCTGAGATG
LOC_Os03g10860
Os.4660.1.S1_s_at--1028--6271Chr03:5561232..5561256 (25 bp)
GATGTAGTAATCGATTCCTCCTCTT
LOC_Os03g10860
Os.4660.1.S1_s_at--188--9771Chr03:5561225..5561249 (25 bp)
TAATCGATTCCTCCTCTTGTATCGA
LOC_Os03g10860
Os.4660.1.S1_s_at--219--9591Chr03:5561211..5561235 (25 bp)
TCTTGTATCGATCCGCCTAGATGAT
LOC_Os03g10860
Os.4660.1.S1_s_at--425--9391Chr03:5561204..5561228 (25 bp)
TCGATCCGCCTAGATGATACTTGGG
LOC_Os03g10860
Target Sequence 
CGTGGACCGAGAGCATCTGCCTCTGCGCGGGCTTCTAGAAGGTCTCCCTTGTGGGCTTGTGGCTGTGGCTTAGCTCGTCC
TCTTCTCTTCGCGACTTCTCTTTGATTTTTTTTTTCTTCNNNCTTTTTTTTTCTTTTCTCCGTCTCACTACTGGGCTCTG
AGATGTAGTAATCGATTCCTCCTCTTGTATCGATCCGCCTAGATGATACTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4660.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis