Browse Element(s) Details


Os.46642.1.S1_at

Description gb:NM_197357.1
DB_XREF= gi:37536073
TID=Os.46642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0076F20.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0076F20.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3726011/11fringe protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37240Os.50862.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.5515.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.50862.1.S1_x_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.2477.1.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.24964.3.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37260Os.46642.1.S1_at11/1110+19625204..19627699fringe protein, putative, expressed
LOC_Os10g37270OsAffx.18553.1.S1_at8/1110+19632000..19632413hypothetical protein
LOC_Os10g37280Os.9843.1.S1_at11/1110+19633110..19641747sphingosine kinase, putative, expressed
LOC_Os10g37290Os.17522.1.S1_s_at11/1110+19642147..19642977expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46642.1.S1_at--447--6911Chr10:19625857..19625881 (25 bp)
GTATCCACCATCTGGAGCTTGTCGA
LOC_Os10g37260
Os.46642.1.S1_at--1021--1531Chr10:19625842..19625866 (25 bp)
AGCTTGTCGATCCTATATACCCTGG
LOC_Os10g37260
Os.46642.1.S1_at--581--291Chr10:19625826..19625850 (25 bp)
ATACCCTGGTTTGAACTCTCTTGAG
LOC_Os10g37260
Os.46642.1.S1_at--681--10551Chr10:19625756..19625780 (25 bp)
TTCTTGCAGCGCTCGATTTGTTATG
LOC_Os10g37260
Os.46642.1.S1_at--745--331Chr10:19625716..19625740 (25 bp)
ATACATTTGCAGTCTCTTTGGGTTA
LOC_Os10g37260
Os.46642.1.S1_at--614--8811Chr10:19625691..19625715 (25 bp)
TGTTGTTCAAGTGTACCCCTATGTT
LOC_Os10g37260
Os.46642.1.S1_at--677--6371Chr10:19625644..19625668 (25 bp)
GATCCGAGCGGACTTACATTGCATA
LOC_Os10g37260
Os.46642.1.S1_at--473--1911Chr10:19625487..19625511 (25 bp)
ACGTGCAAGTGTTCGGGATGACCTA
LOC_Os10g37260
Os.46642.1.S1_at--519--2831Chr10:19625407..19625431 (25 bp)
AAGTTTCTGCATCCCCATTAAGCAA
LOC_Os10g37260
Os.46642.1.S1_at--730--6231Chr10:19625380..19625404 (25 bp)
GATGGCATCTGGTTTGTTCTAATAT
LOC_Os10g37260
Os.46642.1.S1_at--879--8311Chr10:19625316..19625340 (25 bp)
GGCTAATTGTCGTACCACTGATATA
LOC_Os10g37260
Target Sequence 
GTATCCACCATCTGGAGCTTGTCGATCCTATATACCCTGGTTTGAACTCTCTTGAGAGTTTGGAGCTCTTTACAAAGGCT
ATGAAAACAGAACCCATGAGCTTCTTGCAGCGCTCGATTTGTTATGATAAAAGGCAGAAGTATACATTTGCAGTCTCTTT
GGGTTATGTTGTTCAAGTGTACCCCTATGTTCTTCTTCCTCGTGAATTGGAGCGATCCGAGCGGACTTACATTGCATATA
ATAGGATGAGTCAGCGAACTGAATTTGATTTTGACACTAAGGATATTCAGAAATCATTGTGCAAGAAACCTATATTATTT
TTCTTGAAGGATGTTTGGAAGGATGGAAACATAACTAGGGGTTCTTATATACGTGCAAGTGTTCGGGATGACCTAAAAAA
CAAAGTGTTTTGCTTCAGGTCACCCCCTTTACCTGACATAGACGAGATTCAAGTTTCTGCATCCCCATTAAGCAAAAGAT
GGCATCTGGTTTGTTCTAATATTCCTAACAATATATCATATCTTGTTTCTACATTTACATTGGCTAATTGTCGTACCACT
GATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis