Browse Element(s) Details


Os.50862.1.S1_at

Description gb:AK059055.1
DB_XREF= gi:32969073
TID=Os.50862.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F02, full insert sequence.
FL= gb:AK059055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3724011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37210Os.15767.2.S1_x_at10/1110+19578774..19584201Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed
LOC_Os10g37220OsAffx.30698.1.S1_at11/1110+19584507..19585181hypothetical protein
LOC_Os10g37230Os.12700.1.S1_at11/1110+19586024..19587289expressed protein
LOC_Os10g37240Os.50862.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.5515.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.50862.1.S1_x_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.2477.1.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.24964.3.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37260Os.46642.1.S1_at11/1110+19625204..19627699fringe protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50862.1.S1_at--918--3811Chr10:19600106..19600130 (25 bp)
CTCCATTGATTCCTCATGCAAGCTA
LOC_Os10g37240
Os.50862.1.S1_at--124--9251Chr10:19600105..19600129 (25 bp)
TCCATTGATTCCTCATGCAAGCTAG
LOC_Os10g37240
Os.50862.1.S1_at--946--4311Chr10:19600104..19600128 (25 bp)
CCATTGATTCCTCATGCAAGCTAGC
LOC_Os10g37240
Os.50862.1.S1_at--516--3591Chr10:19600103..19600127 (25 bp)
CATTGATTCCTCATGCAAGCTAGCA
LOC_Os10g37240
Os.50862.1.S1_at--137--51Chr10:19600102..19600126 (25 bp)
ATTGATTCCTCATGCAAGCTAGCAG
LOC_Os10g37240
Os.50862.1.S1_at--1037--10771Chr10:19600101..19600125 (25 bp)
TTGATTCCTCATGCAAGCTAGCAGC
LOC_Os10g37240
Os.50862.1.S1_at--251--8831Chr10:19600100..19600124 (25 bp)
TGATTCCTCATGCAAGCTAGCAGCT
LOC_Os10g37240
Os.50862.1.S1_at--72--8251Chr10:19599773..19599797 (25 bp)
GGCACAGAGGAGCGGTAATAACACC
LOC_Os10g37240
Os.50862.1.S1_at--629--5111Chr10:19599772..19599796 (25 bp)
GCACAGAGGAGCGGTAATAACACCT
LOC_Os10g37240
Os.50862.1.S1_at--853--3291Chr10:19599771..19599795 (25 bp)
CACAGAGGAGCGGTAATAACACCTC
LOC_Os10g37240
Os.50862.1.S1_at--545--2391Chr10:19599730..19599754 (25 bp)
AAAAAGGAAGACAAGGGTATATATG
LOC_Os10g37240
Target Sequence 
CTCCATTGATTCCTCATGCAAGCTAGCAGCTATACATCTCCATGCCAAGAAAGAAAAATTCGCCCATTTCAAGCTGCATG
CATGCCCATCGATCGTTCGTCGCTGGATGTTCCTAGCAAGAAAAAGCTAGTAGCATCGATCCATTTCTTGATTCGTTCTT
GTGTTAATTACAGTGGTCTCTCCCATCTCGCGTCTCCTCTTAGCTAGTGTTAAAAGCAAAAAAAAAGGAATTGGTGGCGT
GGTAATTTATTGATTTGTTGTGGTAAATTTAATAAGGACCCTCCATTCGTGAGGGTTCACGGAGAGGGTTTAAAACTTGG
TGCGGTGAAAAACGGCACAGAGGAGCGGTAATAACACCTCGCTCTCGCGGTTAAAAAAAAAGGAAGACAAGGGTATATAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis