Browse Element(s) Details


Os.12700.1.S1_at

Description gb:AK103655.1
DB_XREF= gi:32988864
TID=Os.12700.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0076F20.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135F01, full insert sequence.
FL= gb:AK103655.1 gb:AK059344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3723011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37180Os.8488.1.S1_s_at10/1110+19565050..19567162Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os10g37190Os.12804.1.S1_at11/1110+19569421..19571239Protein kinase domain containing protein, expressed
LOC_Os10g37210Os.15767.2.S1_x_at10/1110+19578774..19584201Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed
LOC_Os10g37220OsAffx.30698.1.S1_at11/1110+19584507..19585181hypothetical protein
LOC_Os10g37230Os.12700.1.S1_at11/1110+19586024..19587289expressed protein
LOC_Os10g37240Os.50862.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.5515.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.50862.1.S1_x_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.2477.1.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.24964.3.S1_x_at1/1110+19599333..19605119expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12700.1.S1_at--1113--1011Chr10:19586479..19586503 (25 bp)
AGGTACAGGAACTGCGACTTCGCCG
LOC_Os10g37230
Os.12700.1.S1_at--790--2051Chr10:19586463..19586487 (25 bp)
ACTTCGCCGAGCTCTGGATCAAGGA
LOC_Os10g37230
Os.12700.1.S1_at--424--51Chr10:19586334..19586358 (25 bp)
ATTGAATTCATTGTGCCGCATTGCG
LOC_Os10g37230
Os.12700.1.S1_at--1116--4511Chr10:19586320..19586344 (25 bp)
GCCGCATTGCGTTGCAATTTTGCAT
LOC_Os10g37230
Os.12700.1.S1_at--876--7431Chr10:19586206..19586230 (25 bp)
GTGTAGCGGCAAATCAATCTATCTA
LOC_Os10g37230
Os.12700.1.S1_at--362--3151Chr10:19586156..19586180 (25 bp)
AATTCTTTTGGCCTTTGATCAATTG
LOC_Os10g37230
Os.12700.1.S1_at--444--8831Chr10:19586141..19586165 (25 bp)
TGATCAATTGACCATGTACCTGTTT
LOC_Os10g37230
Os.12700.1.S1_at--167--6991Chr10:19586126..19586150 (25 bp)
GTACCTGTTTTTGCTGTTTCTGAAT
LOC_Os10g37230
Os.12700.1.S1_at--637--311Chr10:19586103..19586127 (25 bp)
ATACTGATCATACTGGCTAGCCTTC
LOC_Os10g37230
Os.12700.1.S1_at--370--8311Chr10:19586089..19586113 (25 bp)
GGCTAGCCTTCTCTAATGCTGGAAT
LOC_Os10g37230
Os.12700.1.S1_at--204--2271Chr10:19586060..19586084 (25 bp)
AAATCAGGTTGGGTCTCGAGTGTCC
LOC_Os10g37230
Target Sequence 
AGGTACAGGAACTGCGACTTCGCCGAGCTCTGGATCAAGGAGGCCGACGAGCTCAAGGCCGACAAGGAGAAGCAGAAGCA
GCAGCAGATCGTCATGGCCAACGGCGAGAAGGAGAAAGACGAGGAGGGGAATTGAATCGAATCCAATTGAATTCATTGTG
CCGCATTGCGTTGCAATTTTGCATCGAATTGGTTCAAATCTGTTGTTTATTGGGTTGGGGTTGGGTGGTAGGCTATGAGT
GGATAGCTCTAGTATTGGTAGTAGTACGCTTTTGTGTAGCGGCAAATCAATCTATCTATGAGTCCTCAATGTTCAGGAAT
TTTAATTCTTTTGGCCTTTGATCAATTGACCATGTACCTGTTTTTGCTGTTTCTGAATACTGATCATACTGGCTAGCCTT
CTCTAATGCTGGAATTGAGAAATCAGGTTGGGTCTCGAGTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis