Browse Element(s) Details


Os.15767.2.S1_x_at

Description gb:CB620164
DB_XREF= gi:29615151
DB_XREF=OSIIEa05C22.r
CLONE=OSIIEa05C22
TID=Os.15767.2
CNT=29
FEA=mRNA
TIER=Stack
STK=8
UG=Os.15767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative electron transfer oxidoreductase (OSJNBa0076F20.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3721010/11Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37170OsAffx.25579.1.S1_x_at11/1110+19554594..19558613retrotransposon protein, putative, unclassified
LOC_Os10g37170OsAffx.25579.2.S1_x_at7/1110+19554594..19558613retrotransposon protein, putative, unclassified
LOC_Os10g37180Os.8488.1.S1_s_at10/1110+19565050..19567162Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os10g37190Os.12804.1.S1_at11/1110+19569421..19571239Protein kinase domain containing protein, expressed
LOC_Os10g37210Os.15767.2.S1_x_at10/1110+19578774..19584201Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed
LOC_Os10g37220OsAffx.30698.1.S1_at11/1110+19584507..19585181hypothetical protein
LOC_Os10g37230Os.12700.1.S1_at11/1110+19586024..19587289expressed protein
LOC_Os10g37240Os.50862.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.5515.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.50862.1.S1_x_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.2477.1.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.24964.3.S1_x_at1/1110+19599333..19605119expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009646biological_processresponse to absence of light
GO:0005739cellular_componentmitochondrion
GO:0005740cellular_componentmitochondrial envelope
GO:0003824molecular_functioncatalytic activity
GO:0009054molecular_functionelectron acceptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15767.2.S1_x_at--942--71NONE
ATTGCCTTGTCTGCACTGGAACGAT
NONE
Os.15767.2.S1_x_at--876--5091Chr10:19583003..19583027 (25 bp)
GCACGGGATACCTGACCATGAAGCA
LOC_Os10g37210
Os.15767.2.S1_x_at--325--2131Chr10:19582781..19583171 (25 bp)
ACAGATATGGCCAGTTTGCACTCGC
LOC_Os10g37210
Os.15767.2.S1_x_at--462--5111Chr10:19583164..19583188 (25 bp)
GCACTCGCCTATTCAATATCCGAAA
LOC_Os10g37210
Os.15767.2.S1_x_at--638--251Chr10:19583201..19583225 (25 bp)
ATATCCTTTGACGTACCAACTTCTT
LOC_Os10g37210
Os.15767.2.S1_x_at--1036--9511Chr10:19583561..19583585 (25 bp)
TCATCTCCGTTTGAGGGATCCTACA
LOC_Os10g37210
Os.15767.2.S1_x_at--147--2271Chr10:19583600..19583624 (25 bp)
AAATCTTCCTCTGTATGCTGGACCA
LOC_Os10g37210
Os.15767.2.S1_x_at--1135--1151Chr10:19583648..19583779 (25 bp)
AGTTTACGAGTATGTCACCGACGAG
LOC_Os10g37210
Os.15767.2.S1_x_at--87--10811Chr10:19583815..19583927 (25 bp)
TTGTCTTCATTGCAAGGCTTGTGAC
LOC_Os10g37210
Os.15767.2.S1_x_at--150--8351Chr10:19583976..19584000 (25 bp)
GGCGGTCCAGGGTACACAGTAATGT
LOC_Os10g37210
Os.15767.2.S1_x_at--799--5131Chr10:19584009..19584033 (25 bp)
GCAAAATACTGCCTGATACCATGAA
LOC_Os10g37210
Target Sequence 
ATTGCCTTGTCTGCACTGGAACGATACGTATTCAAAGGAAAGTCCCCCTTTACCTTAAAGCACGGGATACCTGACCATGA
AGCAACAGATATGGCCAGTTTGCACTCGCCTATTCAATATCCGAAACCAGATGGTCAAATATCCTTTGACGTACCAACTT
CTTTATACAGGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGATCCTACAGTACCGGAGAGA
GTAAATCTTCCTCTGTATGCTGGACCAGAGTCACATTATTGTCCAGCTCGAGTTTACGAGTATGTCACCGACGAGAAAGG
TGACCAGAAGCTTCACATAAATGCTCAAAATTGTCTTCATTGCAAGGCTTGTGACATCAAAGATCCAAAGCAAAACATCG
AATGGACCGTTCCAGAAGGTGGAGGCGGTCCAGGGTACACAGTAATGTAGACGATAGCAAAATACTGCCTGATACCATGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15767.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis