Browse Element(s) Details


OsAffx.25579.1.S1_x_at

Description gb:NM_197348.1
DB_XREF= gi:37536055
TID=OsAffx.25579.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNBa0026L12.31), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3717011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37110Os.22726.1.A1_at9/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110Os.46643.1.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110OsAffx.30695.2.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37110OsAffx.30695.4.S1_x_at1/1110+19529099..19530997transposon protein, putative, unclassified, expressed
LOC_Os10g37120Os.46643.1.S1_x_at1/1110+19534604..19536163transposon protein, putative, unclassified
LOC_Os10g37160Os.46872.1.S1_at11/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.2.S1_x_at2/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30725.2.S1_x_at2/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.3.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.4.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160Os.46643.1.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37170OsAffx.25579.1.S1_x_at11/1110+19554594..19558613retrotransposon protein, putative, unclassified
LOC_Os10g37170OsAffx.25579.2.S1_x_at7/1110+19554594..19558613retrotransposon protein, putative, unclassified
LOC_Os10g37180Os.8488.1.S1_s_at10/1110+19565050..19567162Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os10g37190Os.12804.1.S1_at11/1110+19569421..19571239Protein kinase domain containing protein, expressed
LOC_Os10g37210Os.15767.2.S1_x_at10/1110+19578774..19584201Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25579.1.S1_x_at--1096--8151Chr10:19558110..19558134 (25 bp)
GGAAACACTCAAGCCATACCTAGAT
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--403--4171Chr10:19558144..19558168 (25 bp)
CGCCGGCCAGCGTATGGATGATCAA
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--26--2292Chr10:19558239..19558263 (25 bp)
AAATGCCTGGTTGCTTGCTCGGAGA
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--719--792Chr10:19558273..19558297 (25 bp)
ATGTGGTGCTACCTGAGCTTGCAGA
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--393--2791Chr10:19558336..19558360 (25 bp)
AAGAGGGCCTGGAACACATTGTCAT
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--1033--851Chr10:19558359..19558383 (25 bp)
ATGGCATCTGATTGTCTCACTGTAA
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--1028--7052Chr10:19558380..19558404 (25 bp)
GTAATCAGACGCATCCAAACTTCAG
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--1022--7252Chr10:19558457..19558481 (25 bp)
GTCCACCTTTGTTTTATGCTCTTTT
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--360--9792Chr10:19558490..19558514 (25 bp)
TAACCGGTTGTCCAATTTGGCGGCT
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--163--8212Chr10:19558528..19558552 (25 bp)
GGAATGCCGAGCTGTCTACCTGTAC
LOC_Os10g37170
OsAffx.25579.1.S1_x_at--691--1752Chr10:19558545..19558569 (25 bp)
ACCTGTACTGTGTACCGTTCTGTAA
LOC_Os10g37170
Target Sequence 
GGAAACACTCAAGCCATACCTAGATGGCAGCCACCGCCGGCCAGCGTATGGATGATCAATTCTGATGCTGCGATTTTCAG
CTCGTCCAGGACCATGGGGGTCGGGGCTTTGATTCGTGATAATACAGGGAAATGCCTGGTTGCTTGCTCGGAGATGATCA
GCGATGTGGTGCTACCTGAGCTTGCAGAAGCGCTGGCAATTAGGCGGGCACTGGGTCTAGCAAAGGAAGAGGGCCTGGAA
CACATTGTCATGGCATCTGATTGTCTCACTGTAATCAGACGCATCCAAACTTCAGGAAGGGATCGCTCAGGGGTGGGATG
CGTGATTGAAGATATCAAGAAGTTGGCGTCCACCTTTGTTTTATGCTCTTTTATGCATGTTAACCGGTTGTCCAATTTGG
CGGCTCATTCTCTAGCTCGGAATGCCGAGCTGTCTACCTGTACTGTGTACCGTTCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25579.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis