Browse Element(s) Details

Os.46872.1.S1_at

Description

gb:AK106424.1
DB_XREF= gi:32991633
TID=Os.46872.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBa0026L12.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B07, full insert sequence.
FL= gb:AK106424.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g37160	11/11	transposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g37100	OsAffx.30695.3.S1_x_at	11/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37100	OsAffx.30695.1.S1_x_at	4/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37100	OsAffx.30695.2.S1_x_at	2/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37100	OsAffx.30695.4.S1_x_at	2/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37100	Os.46643.1.S1_x_at	1/11	10	+	19526960..19528498	Cytochrome P450 family protein
LOC_Os10g37110	Os.22726.1.A1_at	9/11	10	+	19529099..19530997	transposon protein, putative, unclassified, expressed
LOC_Os10g37110	Os.46643.1.S1_x_at	1/11	10	+	19529099..19530997	transposon protein, putative, unclassified, expressed
LOC_Os10g37110	OsAffx.30695.2.S1_x_at	1/11	10	+	19529099..19530997	transposon protein, putative, unclassified, expressed
LOC_Os10g37110	OsAffx.30695.4.S1_x_at	1/11	10	+	19529099..19530997	transposon protein, putative, unclassified, expressed
LOC_Os10g37120	Os.46643.1.S1_x_at	1/11	10	+	19534604..19536163	transposon protein, putative, unclassified
LOC_Os10g37160	Os.46872.1.S1_at	11/11	10	+	19551715..19553585	transposon protein, putative, unclassified, expressed
LOC_Os10g37160	OsAffx.30695.2.S1_x_at	2/11	10	+	19551715..19553585	transposon protein, putative, unclassified, expressed
LOC_Os10g37160	OsAffx.30725.2.S1_x_at	2/11	10	+	19551715..19553585	transposon protein, putative, unclassified, expressed
LOC_Os10g37160	OsAffx.30695.3.S1_x_at	1/11	10	+	19551715..19553585	transposon protein, putative, unclassified, expressed
LOC_Os10g37160	OsAffx.30695.4.S1_x_at	1/11	10	+	19551715..19553585	transposon protein, putative, unclassified, expressed
LOC_Os10g37160	Os.46643.1.S1_x_at	1/11	10	+	19551715..19553585	transposon protein, putative, unclassified, expressed
LOC_Os10g37170	OsAffx.25579.1.S1_x_at	11/11	10	+	19554594..19558613	retrotransposon protein, putative, unclassified
LOC_Os10g37170	OsAffx.25579.2.S1_x_at	7/11	10	+	19554594..19558613	retrotransposon protein, putative, unclassified
LOC_Os10g37180	Os.8488.1.S1_s_at	10/11	10	+	19565050..19567162	Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os10g37190	Os.12804.1.S1_at	11/11	10	+	19569421..19571239	Protein kinase domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46872.1.S1_at--213--401	1	Chr10:19553322..19553346 (25 bp)	CGTGCCCAGGAGGACGACCTAGAAT	LOC_Os10g37160
Os.46872.1.S1_at--116--689	1	Chr10:19553358..19553382 (25 bp)	GTATATGCCGTTACGTACGGATGCA	LOC_Os10g37160
Os.46872.1.S1_at--1082--797	1	Chr10:19553376..19553400 (25 bp)	GGATGCATGCACGTACGTCGCTGGA	LOC_Os10g37160
Os.46872.1.S1_at--533--189	1	Chr10:19553390..19553414 (25 bp)	ACGTCGCTGGACACTATCTTAATCG	LOC_Os10g37160
Os.46872.1.S1_at--477--213	1	Chr10:19553421..19553445 (25 bp)	ACAGTCGAAGCGCTCATACTTTTTT	LOC_Os10g37160
Os.46872.1.S1_at--907--1039	1	Chr10:19553449..19553473 (25 bp)	TTTTGCTTCTTAGCCATGGTGATGC	LOC_Os10g37160
Os.46872.1.S1_at--264--635	1	Chr10:19553469..19553493 (25 bp)	GATGCTGGCATCGTGAATTCCGCTA	LOC_Os10g37160
Os.46872.1.S1_at--91--521	1	Chr10:19553483..19553507 (25 bp)	GAATTCCGCTACGTTCGTATGTACT	LOC_Os10g37160
Os.46872.1.S1_at--1058--699	1	Chr10:19553503..19553527 (25 bp)	GTACTACTCATGCATAAACCCCTTT	LOC_Os10g37160
Os.46872.1.S1_at--342--227	1	Chr10:19553545..19553569 (25 bp)	AAATCAGACAAGCTGCTGCTGTAGC	LOC_Os10g37160
Os.46872.1.S1_at--954--383	1	Chr10:19553557..19553581 (25 bp)	CTGCTGCTGTAGCTTGATCGCAAGT	LOC_Os10g37160

Target Sequence

CGTGCCCAGGAGGACGACCTAGAATAATAATGCTACGTATATGCCGTTACGTACGGATGCATGCACGTACGTCGCTGGAC
ACTATCTTAATCGTGTCGAACAGTCGAAGCGCTCATACTTTTTTTTTTTTTTGCTTCTTAGCCATGGTGATGCTGGCATC
GTGAATTCCGCTACGTTCGTATGTACTACTCATGCATAAACCCCTTTGTTTTGGTTATCGAATAAAATCAGACAAGCTGC
TGCTGTAGCTTGATCGCAAGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis