Browse Element(s) Details


Os.8488.1.S1_s_at

Description gb:AK062851.1
DB_XREF= gi:32972869
TID=Os.8488.1
CNT=93
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycine decarboxylase subunit (OSJNBa0076F20.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A03, full insert sequence.
FL= gb:AK120480.1 gb:AK104840.1 gb:AK062851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3718010/11Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37160Os.46872.1.S1_at11/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.2.S1_x_at2/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30725.2.S1_x_at2/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.3.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160OsAffx.30695.4.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37160Os.46643.1.S1_x_at1/1110+19551715..19553585transposon protein, putative, unclassified, expressed
LOC_Os10g37170OsAffx.25579.1.S1_x_at11/1110+19554594..19558613retrotransposon protein, putative, unclassified
LOC_Os10g37170OsAffx.25579.2.S1_x_at7/1110+19554594..19558613retrotransposon protein, putative, unclassified
LOC_Os10g37180Os.8488.1.S1_s_at10/1110+19565050..19567162Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os10g37190Os.12804.1.S1_at11/1110+19569421..19571239Protein kinase domain containing protein, expressed
LOC_Os10g37210Os.15767.2.S1_x_at10/1110+19578774..19584201Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed
LOC_Os10g37220OsAffx.30698.1.S1_at11/1110+19584507..19585181hypothetical protein
LOC_Os10g37230Os.12700.1.S1_at11/1110+19586024..19587289expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006546biological_processglycine catabolism
GO:0009853biological_processphotorespiration
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005960cellular_componentglycine cleavage complex
GO:0004375molecular_functionglycine dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8488.1.S1_s_at--1110--9611Chr10:19565298..19565322 (25 bp)
TCATGCAGTGGAGCCACCAGGGCTG
LOC_Os10g37180
Os.8488.1.S1_s_at--1076--3811Chr10:19565326..19565350 (25 bp)
CTGCCTACTCAATCTCCAGATACTT
LOC_Os10g37180
Os.8488.1.S1_s_at--948--3051NONE
AATCTCCAGATACTTCTCCACTGTT
NONE
Os.8488.1.S1_s_at--624--1271Chr10:19565343..19565727 (25 bp)
AGATACTTCTCCACTGTTCTTGATG
LOC_Os10g37180
Os.8488.1.S1_s_at--949--9491Chr10:19565350..19565734 (25 bp)
TCTCCACTGTTCTTGATGGGTTGAA
LOC_Os10g37180
Os.8488.1.S1_s_at--821--1591Chr10:19565739..19565763 (25 bp)
AGCTCCTCTCATGAGTGGGTCAAGA
LOC_Os10g37180
Os.8488.1.S1_s_at--492--7831Chr10:19565756..19565780 (25 bp)
GGTCAAGAATGATGGCTCTGTGGCC
LOC_Os10g37180
Os.8488.1.S1_s_at--1018--8311Chr10:19565769..19565793 (25 bp)
GGCTCTGTGGCCACAATTGGAATTA
LOC_Os10g37180
Os.8488.1.S1_s_at--357--7551Chr10:19565775..19565799 (25 bp)
GTGGCCACAATTGGAATTACAGACC
LOC_Os10g37180
Os.8488.1.S1_s_at--301--2211Chr10:19567026..19567050 (25 bp)
ACAACTGCTCTGTATCCGTATACGA
LOC_Os10g37180
Os.8488.1.S1_s_at--184--9811Chr10:19567055..19567079 (25 bp)
TAACTGAATCTTCAGGCTTTGCCAT
LOC_Os10g37180
Target Sequence 
TCATGCAGTGGAGCCACCAGGGCTGCACCTGCCTACTCAATCTCCAGATACTTCTCCACTGTTCTTGATGGGTTGAAGTA
CAGCTCCTCTCATGAGTGGGTCAAGAATGATGGCTCTGTGGCCACAATTGGAATTACAGACCATGCTCAGGGCCATCTGG
GAGAGGTGGTGTTCGTGGAGCTGCCGGAGGCGGGGGCGAAGGTGAGCCAGGGAGGTGCATTCGGCAACGTGGAGAGTGTG
AAGGCCACCAGCGACATCAACTCCCCCATCTCCGGTGAGGTCGTCGAGGTTAACGACAAGCTCTCTGNAGACACCCGGCC
TGATTAACTCAAGCCCGTACGAGGACGGGTGGATGATCAAGGTGAAGCCGAGCAGCCCGTCGGAGCTGGACGCCCTGCTG
GACCCGGCCAAGTACACCAAGCACTGCGAGGAGGAAGACGCTCACTAGGCTCTTCCTCTCTGTTTTTTTTCTNTCCCATT
TTGTCACTCCGACCTAATTTCTCCCTGTTGCAACAACTGCTCTGTATCCGTATACGATTAATAACTGAATCTTCAGGCTT
TGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8488.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis