Browse Element(s) Details


OsAffx.30698.1.S1_at

Description gb:NM_197353.1
DB_XREF= gi:37536065
TID=OsAffx.30698.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0076F20.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3722011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37180Os.8488.1.S1_s_at10/1110+19565050..19567162Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os10g37190Os.12804.1.S1_at11/1110+19569421..19571239Protein kinase domain containing protein, expressed
LOC_Os10g37210Os.15767.2.S1_x_at10/1110+19578774..19584201Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed
LOC_Os10g37220OsAffx.30698.1.S1_at11/1110+19584507..19585181hypothetical protein
LOC_Os10g37230Os.12700.1.S1_at11/1110+19586024..19587289expressed protein
LOC_Os10g37240Os.50862.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.5515.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.50862.1.S1_x_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.2477.1.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.24964.3.S1_x_at1/1110+19599333..19605119expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30698.1.S1_at--1072--10151Chr10:19584618..19584642 (25 bp)
TATCTTTCATTTGCTCCTCAGTCTT
LOC_Os10g37220
OsAffx.30698.1.S1_at--170--9711Chr10:19584680..19584704 (25 bp)
TCAACTCCACTCTTCAAGGTTTCAA
LOC_Os10g37220
OsAffx.30698.1.S1_at--551--1491Chr10:19584855..19584879 (25 bp)
AGCAACTCATCAGATTCCAACCATT
LOC_Os10g37220
OsAffx.30698.1.S1_at--50--3251Chr10:19584872..19584896 (25 bp)
CAACCATTCTCAGGCAGGAACCAAT
LOC_Os10g37220
OsAffx.30698.1.S1_at--721--751Chr10:19584895..19584919 (25 bp)
ATGTACTGATCCATTCTGGCTGTGC
LOC_Os10g37220
OsAffx.30698.1.S1_at--1124--8331Chr10:19584912..19584936 (25 bp)
GGCTGTGCTTTCTGTGATCCATACG
LOC_Os10g37220
OsAffx.30698.1.S1_at--1155--6351Chr10:19584927..19584951 (25 bp)
GATCCATACGGCATTTTGCAACGAA
LOC_Os10g37220
OsAffx.30698.1.S1_at--605--5211Chr10:19584949..19584973 (25 bp)
GAATTCAGTATTCAGCTTACAGCCA
LOC_Os10g37220
OsAffx.30698.1.S1_at--531--7331Chr10:19584980..19585004 (25 bp)
GTGCACATGCATTACAGTGGGCTCA
LOC_Os10g37220
OsAffx.30698.1.S1_at--325--8951Chr10:19585039..19585063 (25 bp)
TGACTACTGACACCAATTGCTGCTG
LOC_Os10g37220
OsAffx.30698.1.S1_at--6--6011Chr10:19585086..19585110 (25 bp)
GAGACCAGATACTTTGCTTTCAGAT
LOC_Os10g37220
Target Sequence 
TATCTTTCATTTGCTCCTCAGTCTTCAGCTGCAACACGCTCTTCCTCTGCTGTCCGGATGCCTCAACTCCACTCTTCAAG
GTTTCAAGGTTTGAGGAATTCAAGCAACTCATCAGATTCCAACCATTCTCAGGCAGGAACCAATGTACTGATCCATTCTG
GCTGTGCTTTCTGTGATCCATACGGCATTTTGCAACGAATTCAGTATTCAGCTTACAGCCAAGACATGTGCACATGCATT
ACAGTGGGCTCAAAACAGCAAACCCAACGTTTCAGTACACAGTTGCTGACTACTGACACCAATTGCTGCTGGTTCCAAGC
TTCAGAGTTCAGAGAGACCAGATACTTTGCTTTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis