Browse Element(s) Details


Os.5515.1.S1_at

Description gb:AU088729
DB_XREF= gi:7378458
DB_XREF=AU088729
CLONE=S4946
TID=Os.5515.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription factor (OSJNBa0076F20.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3724011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37210Os.15767.2.S1_x_at10/1110+19578774..19584201Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed
LOC_Os10g37220OsAffx.30698.1.S1_at11/1110+19584507..19585181hypothetical protein
LOC_Os10g37230Os.12700.1.S1_at11/1110+19586024..19587289expressed protein
LOC_Os10g37240Os.50862.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.5515.1.S1_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240Os.50862.1.S1_x_at11/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.2477.1.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37240OsAffx.24964.3.S1_x_at1/1110+19599333..19605119expressed protein
LOC_Os10g37260Os.46642.1.S1_at11/1110+19625204..19627699fringe protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5515.1.S1_at--449--8311Chr10:19599646..19599670 (25 bp)
GGCTATGTGTACTACTGCTCGATCT
LOC_Os10g37240
Os.5515.1.S1_at--88--2031Chr10:19599636..19599660 (25 bp)
ACTACTGCTCGATCTACTGTGGCAT
LOC_Os10g37240
Os.5515.1.S1_at--214--3731Chr10:19599623..19599647 (25 bp)
CTACTGTGGCATGTTGCAAGGGCGC
LOC_Os10g37240
Os.5515.1.S1_at--1148--1271Chr10:19599567..19599591 (25 bp)
AGATGTGCTCATCAAGTGAAGTGGC
LOC_Os10g37240
Os.5515.1.S1_at--168--4831Chr10:19599561..19599585 (25 bp)
GCTCATCAAGTGAAGTGGCAGTGAA
LOC_Os10g37240
Os.5515.1.S1_at--991--7771Chr10:19599522..19599546 (25 bp)
GGTGCTGGTGTATGCCGGAATTTTT
LOC_Os10g37240
Os.5515.1.S1_at--1047--10131Chr10:19599512..19599536 (25 bp)
TATGCCGGAATTTTTCCCATTTCTC
LOC_Os10g37240
Os.5515.1.S1_at--809--10331Chr10:19599442..19599466 (25 bp)
TTTTCTAATTACCTAAACTGTCCAT
LOC_Os10g37240
Os.5515.1.S1_at--962--2551Chr10:19599427..19599451 (25 bp)
AACTGTCCATTATGTATTACCTGAG
LOC_Os10g37240
Os.5515.1.S1_at--544--8811Chr10:19599378..19599402 (25 bp)
TGTTGTTACCGAAGTTTTACAGTGT
LOC_Os10g37240
Os.5515.1.S1_at--680--6811Chr10:19599365..19599389 (25 bp)
GTTTTACAGTGTATACTCGCGACAT
LOC_Os10g37240
Target Sequence 
GGCTATGTGTACTACTGCTCGATCTACTGTGGCATGTTGCAAGGGCGCGGNNAAAAAAAAATCGAAGGTGAAAAATTAAA
GATGTGCTCATCAAGTGAAGTGGCAGTGAAAAAGCAAGAGAGCTGGTGCTGGTGTATGCCGGAATTTTTCCCATTTCTCT
TTTTTTTCTCTTTTCTCTCCTTCTTTTATATGTTTTGTTTTGTTTTTTCTAATTACCTAAACTGTCCATTATGTATTACC
TGAGTTTTTTTTTCTTCCTTTCCCAAACTGTTGTTACCGAAGTTTTACAGTGTATACTCGCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis