Browse Element(s) Details


Os.46678.1.S1_at

Description gb:AK119814.1
DB_XREF= gi:37989437
TID=Os.46678.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative inositol-1,4,5-trisphosphate 5-Phosphatase-like protein (OSJNBa0075H14.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-177-A06, full insert sequence.
FL= gb:AK119814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2866011/11Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28620OsAffx.20335.1.S1_at11/1110+14590674..14590958hypothetical protein
LOC_Os10g28630Os.46891.1.S1_at11/1110+14592526..14595637Homocysteine S-methyltransferase 2, putative, expressed
LOC_Os10g28640Os.39261.1.S1_at10/1110+14596619..14600381expressed protein
LOC_Os10g28650Os.35344.3.S1_x_at9/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650Os.35344.18.S1_x_at7/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650OsAffx.22940.5.S1_x_at2/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28660Os.46678.1.S1_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os10g28660Os.46678.2.S1_x_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os10g28680Os.8260.1.S1_at11/1110+14631191..14633483expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46678.1.S1_at--186--4771Chr10:14619007..14619031 (25 bp)
GCTGCATTTGCACATCGTAGTTATG
LOC_Os10g28660
Os.46678.1.S1_at--264--1271Chr10:14619123..14619147 (25 bp)
AGATAGATGCCAAGATCCTTTTTCC
LOC_Os10g28660
Os.46678.1.S1_at--660--9971Chr10:14619165..14619189 (25 bp)
TACCTGGTCCATGTACATCATTTGC
LOC_Os10g28660
Os.46678.1.S1_at--965--5691Chr10:14619226..14619250 (25 bp)
GACTTTTTACAGGTACCATCCATTA
LOC_Os10g28660
Os.46678.1.S1_at--367--2791Chr10:14619263..14619287 (25 bp)
AAGAGATTTTCCACTGACTCCACAA
LOC_Os10g28660
Os.46678.1.S1_at--287--291Chr10:14619351..14619375 (25 bp)
ATAGTACTGGCCATTCAAATCTGAA
LOC_Os10g28660
Os.46678.1.S1_at--160--5411Chr10:14619373..14619397 (25 bp)
GAAGCTCAGATGACTTTGGCCAAAG
LOC_Os10g28660
Os.46678.1.S1_at--96--2151Chr10:14619422..14619446 (25 bp)
ACAGCAGCAAGCGTGCATCAGTTTA
LOC_Os10g28660
Os.46678.1.S1_at--918--4951Chr10:14619436..14619460 (25 bp)
GCATCAGTTTATTTTTCTTCACCCC
LOC_Os10g28660
Os.46678.1.S1_at--267--5611Chr10:14619529..14619553 (25 bp)
GACAAGTGTCGGTCTGTACAACTCT
LOC_Os10g28660
Os.46678.1.S1_at--1017--7031Chr10:14619544..14619568 (25 bp)
GTACAACTCTTGTGTTCTTGGCTTT
LOC_Os10g28660
Target Sequence 
GCTGCATTTGCACATCGTAGTTATGAAAGTTTTTTTGTGTAGACAGCTCACATGAGTTCAGAAAAATACCATATGATGTT
CATATTCAGTCATCTTCAGAAGTTCTCTGAATGTTCAGATAGATGCCAAGATCCTTTTTCCTATCCAGACAAGGTACATA
CCTGGTCCATGTACATCATTTGCATGTGGTGAACAAGGAACCTGATGATCAAATATATGGACTTTTTACAGGTACCATCC
ATTAACTAATTAGTAGAAGAGATTTTCCACTGACTCCACAAAAGAAAAAGGAAAACAACTACAAGACTAACATCAAGAGA
AGCATTGCTCATGTGATGAGCAAGATAGTACTGGCCATTCAAATCTGAAGCTCAGATGACTTTGGCCAAAGCAAAGAGAT
GCATGCCAGACAACAACAGCAGCAAGCGTGCATCAGTTTATTTTTCTTCACCCCCCTGTACATTGTAGGCCAATTTCTTT
CATTCTCTTTGGTTGCTTTGACAATGTAAACGATCGAAAAACGACAAGTGTCGGTCTGTACAACTCTTGTGTTCTTGGCT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis