Browse Element(s) Details


Os.39261.1.S1_at

Description gb:NM_196549.1
DB_XREF= gi:37534457
TID=Os.39261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39261 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative endopeptidase (OSJNBa0075H14.5), mRNA.
PROD=putative endopeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2864010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28610Os.15555.1.S1_at11/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.1.S1_x_at3/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.2.S1_x_at1/1110+14574800..14582384expressed protein
LOC_Os10g28620OsAffx.20335.1.S1_at11/1110+14590674..14590958hypothetical protein
LOC_Os10g28630Os.46891.1.S1_at11/1110+14592526..14595637Homocysteine S-methyltransferase 2, putative, expressed
LOC_Os10g28640Os.39261.1.S1_at10/1110+14596619..14600381expressed protein
LOC_Os10g28650Os.35344.3.S1_x_at9/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650Os.35344.18.S1_x_at7/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650OsAffx.22940.5.S1_x_at2/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28660Os.46678.1.S1_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os10g28660Os.46678.2.S1_x_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39261.1.S1_at--815--4351Chr10:14599033..14599057 (25 bp)
CCACTCCAGTTCTTTATGCCGTGGA
LOC_Os10g28640
Os.39261.1.S1_at--1094--7511Chr10:14599053..14599077 (25 bp)
GTGGACCCACTTCTGCATACATTAA
LOC_Os10g28640
Os.39261.1.S1_at--29--1271Chr10:14599109..14599133 (25 bp)
AGATATACTCCTTGGATTTGGGTCA
LOC_Os10g28640
Os.39261.1.S1_at--149--1431Chr10:14599148..14599172 (25 bp)
AGAACAACTCATTGACATCGCCACA
LOC_Os10g28640
Os.39261.1.S1_at--333--711Chr10:14599201..14599225 (25 bp)
ATGATGGAGGCCTTGTTCACGGTGA
LOC_Os10g28640
Os.39261.1.S1_at--882--6751Chr10:14599215..14599239 (25 bp)
GTTCACGGTGATTTGACCACTTCAA
LOC_Os10g28640
Os.39261.1.S1_at--950--1991Chr10:14599377..14599397 (21 bp)
ACTCGTTCTTATTGATTTTGGTCTG
LOC_Os10g28640
Os.39261.1.S1_at--769--6831Chr10:14599399..14599423 (25 bp)
GTTTCATATCAACTATTCCTGAGGA
LOC_Os10g28640
Os.39261.1.S1_at--39--8071Chr10:14599987..14600011 (25 bp)
GGAGAAGATTCTCACGGCGTACAGA
LOC_Os10g28640
Os.39261.1.S1_at--549--5191Chr10:14600023..14600047 (25 bp)
GCAATGGTGCGCTACTACGAACAAG
LOC_Os10g28640
Os.39261.1.S1_at--196--2851Chr10:14600765..14600789 (25 bp)
AAGTGCGACCTAACGTTGACCCTGA
NONE
Target Sequence 
CCACTCCAGTTCTTTATGCCGTGGACCCACTTCTGCATACATTAACCTTTGAGTATGTGGATGGCTTATCTGTGAAAGAT
ATACTCCTTGGATTTGGGTCAAACGGGATCAATGAAGAACAACTCATTGACATCGCCACACAAATAGGAAATGCAGTTGG
CAAACTACATGATGGAGGCCTTGTTCACGGTGATTTGACCACTTCAAATATGATAATCAAGAACAACACAAATCAACTCG
TTCTTATTGATTTTGGTCTGAGTTTCATATCAACTATTCCTGAGGACAAAGCAGTGGACTTATATGTGCTTGAGAGAGCA
TTGATTTCTATGCATTCATCATGTGGTGATGTGATGGAGAAGATTCTCACGGCGTACAGAAAAGCTTCAAAGCAATGGTG
CGCTACTACGAACAAGCTAGCTCAAGCTTGTGCTAGTATAGGCAAGTGCGACCTAACGTTGACCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis