Browse Element(s) Details


Os.15555.1.S1_at

Description gb:AK063303.1
DB_XREF= gi:32973321
TID=Os.15555.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative centromere protein (OSJNBa0075H14.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F05, full insert sequence.
FL= gb:AK063303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2861011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28610Os.15555.1.S1_at11/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.1.S1_x_at3/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.2.S1_x_at1/1110+14574800..14582384expressed protein
LOC_Os10g28620OsAffx.20335.1.S1_at11/1110+14590674..14590958hypothetical protein
LOC_Os10g28630Os.46891.1.S1_at11/1110+14592526..14595637Homocysteine S-methyltransferase 2, putative, expressed
LOC_Os10g28640Os.39261.1.S1_at10/1110+14596619..14600381expressed protein
LOC_Os10g28650Os.35344.3.S1_x_at9/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650Os.35344.18.S1_x_at7/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650OsAffx.22940.5.S1_x_at2/1110+14601998..14607709transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15555.1.S1_at--754--3431Chr10:14575331..14575355 (25 bp)
CAGTATGTCCTGCTAAAGCTTGAAG
LOC_Os10g28610
Os.15555.1.S1_at--1162--891Chr10:14575289..14575313 (25 bp)
AGGCTCAAGGTCTCCGATAAGCGCA
LOC_Os10g28610
Os.15555.1.S1_at--1011--3951Chr10:14575262..14575286 (25 bp)
CGGGTTCTTCTGAGGGATTATCTGT
LOC_Os10g28610
Os.15555.1.S1_at--388--3891Chr10:14575176..14575200 (25 bp)
CTGTGTGCAATCAAGAACTGAGACT
LOC_Os10g28610
Os.15555.1.S1_at--464--10771Chr10:14575142..14575166 (25 bp)
TTGTTCTGGCGGGAAACTAGCTATA
LOC_Os10g28610
Os.15555.1.S1_at--679--8731Chr10:14575094..14575118 (25 bp)
TGTCAGCTCCAAGAGGCTGTAGCAC
LOC_Os10g28610
Os.15555.1.S1_at--850--7671Chr10:14575046..14575070 (25 bp)
GGGTTCATCCCCATTGTAATTGAGT
LOC_Os10g28610
Os.15555.1.S1_at--137--6071Chr10:14575025..14575049 (25 bp)
GAGTTAGTATTTTAGTGCTCAAAAC
LOC_Os10g28610
Os.15555.1.S1_at--169--6891Chr10:14574991..14575015 (25 bp)
GTATCTAAAATTTTGGCTTTCCTGT
LOC_Os10g28610
Os.15555.1.S1_at--684--8291Chr10:14574977..14575001 (25 bp)
GGCTTTCCTGTCTAAATGAGGCCAT
LOC_Os10g28610
Os.15555.1.S1_at--301--6231Chr10:14574960..14574984 (25 bp)
GAGGCCATCTAAGCTTAGTTCAATA
LOC_Os10g28610
Target Sequence 
CAGTATGTCCTGCTAAAGCTTGAAGAGGAGCATGAGTACANGGAGGCTCAAGGTCTCCGATAAGCGCACNTCGGGTTCTT
CTGAGGGATTATCTGTATGGAAGGAAGGAGAAGCGCGGCGGTGCGCAGAAGAAAAAGAAGAGGGCNCCTTTCTGTGNCTG
TGTGCAATCAAGAACTGAGACTTNGAACCATTTTGTTCTGGCGGGAAACTAGCTATAAAATGAAAAGGGAAGATGAGAGA
TGTCAGCTCCAAGAGGCTGTAGCACNTGCTTTGAGCAGNCCATGTTCTTGGGTTCATCCCCATTGTAATTGAGTTAGTAT
TTTAGTGCTCAAAACAAAGCATATGTATCTAAAATTTTGGCTTTCCTGTCTAAATGAGGCCATCTAAGCTTAGTTCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis