Browse Element(s) Details


OsAffx.30576.1.S1_at

Description tigr:9638.m02426
TID=OsAffx.30576.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ccr4-not transcription complex, subunit 7 (ccr4-associated factor 1) (caf1). (mouse, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2859011/11CAF1 family ribonuclease containing protein
LOC_Os10g285407/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28560OsAffx.8119.1.S1_at11/1110+14535028..14535306hypothetical protein
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein
LOC_Os10g28580OsAffx.30572.2.S1_at11/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28580OsAffx.30576.2.S1_x_at1/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28610Os.15555.1.S1_at11/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.1.S1_x_at3/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.2.S1_x_at1/1110+14574800..14582384expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30576.1.S1_at--303--10431Chr10:14560017..14560041 (25 bp)
TTATGAACTCATCAAGACATTTCTT
LOC_Os10g28590
OsAffx.30576.1.S1_at--569--5671Chr10:14560002..14560026 (25 bp)
GACATTTCTTAAGGATTCTGACTTG
LOC_Os10g28590
OsAffx.30576.1.S1_at--459--2911Chr10:14559992..14560016 (25 bp)
AAGGATTCTGACTTGTACGAAATCA
LOC_Os10g28590
OsAffx.30576.1.S1_at--610--7992Chr10:14559781..14559805 (25 bp)
GGATGATCAGGTCATTCCTTTCTCC
LOC_Os10g28590
OsAffx.30576.1.S1_at--561--2772Chr10:14559754..14559778 (25 bp)
AAGACCTTCCAAGCCAATGGTGTTC
LOC_Os10g28590
OsAffx.30576.1.S1_at--132--3672Chr10:14559730..14559754 (25 bp)
CTTACATTGGACACCGGAGAGCATT
LOC_Os10g28590
OsAffx.30576.1.S1_at--934--8132Chr10:14559722..14559746 (25 bp)
GGACACCGGAGAGCATTCTTTCCTG
LOC_Os10g28590
OsAffx.30576.1.S1_at--312--10573Chr10:14559707..14559731 (25 bp)
TTCTTTCCTGCTATATACGATGTTG
LOC_Os10g28590
OsAffx.30576.1.S1_at--1050--313Chr11:24278921..24278944 (23 bp)
ATACGATGTTGCATTGCTTGTGCGT
NONE
OsAffx.30576.1.S1_at--439--72Chr10:14559681..14559705 (25 bp)
ATTGCTTGTGCGTAGATCCTTTGAC
LOC_Os10g28590
OsAffx.30576.1.S1_at--400--6951Chr10:14559670..14559694 (25 bp)
GTAGATCCTTTGACATCATCACAAT
LOC_Os10g28590
Target Sequence 
TTATGAACTCATCAAGACATTTCTTAAGGATTCTGACTTGTACGAAATCATCGTCACATTTATGAACGCTGAAGGAATGT
TGGCTTACAGTCGTGCCTGGAAATTCTGCATCAGTTCCAGGGCAGACAATGCCTGTGTGCATCCTCAACAGTTTGCTAAG
TTTATGGCATCTTGTGGGGCATTGGGTGACCCCAACATATCTTGGGTGACATTTCACGGAGCACATGGGATCGCCAGGAT
GATCAGGTCATTCCTTTCTCCCCAAGACCTTCCAAGCCAATGGTGTTCTTACATTGGACACCGGAGAGCATTCTTTCCTG
CTATATACGATGTTGCATTGCTTGTGCGTAGATCCTTTGACATCATCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis