Browse Element(s) Details


OsAffx.30572.2.S1_at

Description tigr:9638.m02425
TID=OsAffx.30572.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CCR4-associated factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2858011/11CAF1 family ribonuclease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein
LOC_Os10g28560OsAffx.8119.1.S1_at11/1110+14535028..14535306hypothetical protein
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein
LOC_Os10g28580OsAffx.30572.2.S1_at11/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28580OsAffx.30576.2.S1_x_at1/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30572.2.S1_at--142--8631Chr10:14547840..14547864 (25 bp)
TGGTGGCAGAAAACCTCGGCGAAGA
LOC_Os10g28580
OsAffx.30572.2.S1_at--139--9231Chr10:14547936..14547960 (25 bp)
TCCATCCTCAATTGGACAGGAAGGC
LOC_Os10g28580
OsAffx.30572.2.S1_at--62--2131Chr10:14547951..14547975 (25 bp)
ACAGGAAGGCTTATGAAATGGTCAT
LOC_Os10g28580
OsAffx.30572.2.S1_at--210--411Chr10:14548031..14548055 (25 bp)
ATCAGTCGTTTCACGTCAGACAATG
LOC_Os10g28580
OsAffx.30572.2.S1_at--983--3651Chr10:14548197..14548221 (25 bp)
CTTCATCGATCAGCGGAGAGAGTTT
LOC_Os10g28580
OsAffx.30572.2.S1_at--824--1351Chr10:14548213..14548237 (25 bp)
AGAGAGTTTCCTCCCTAGCTTGTAT
LOC_Os10g28580
OsAffx.30572.2.S1_at--1064--4931Chr10:14548244..14548268 (25 bp)
GCATTGATCGTTCGTCGATTCCTTG
LOC_Os10g28580
OsAffx.30572.2.S1_at--705--4031Chr10:14548252..14548276 (25 bp)
CGTTCGTCGATTCCTTGGCATTGGC
LOC_Os10g28580
OsAffx.30572.2.S1_at--1054--10831Chr10:14548266..14548290 (25 bp)
TTGGCATTGGCACACTCCCTACAAC
LOC_Os10g28580
OsAffx.30572.2.S1_at--1081--9291Chr10:14548281..14548305 (25 bp)
TCCCTACAACCGAGCGCAATGGAGG
LOC_Os10g28580
OsAffx.30572.2.S1_at--504--4231Chr10:14548290..14548314 (25 bp)
CCGAGCGCAATGGAGGTATTTTTGA
LOC_Os10g28580
Target Sequence 
TGGTGGCAGAAAACCTCGGCGAAGAGGCGCGACGAATCGGAGAGCTGGTGGACAGCAACTTCAGCATCATTGGAGTAGAG
GTAAATCAGGTAGTAATCCATCCTCAATTGGACAGGAAGGCTTATGAAATGGTCATCGCGTTCATGAACCCTGAAGGAAT
GTTGGCTTACGGGCGTGCCTGGAAATTCTGCATCAGTCGTTTCACGTCAGACAATGGCAATGTACTGAATCTGAAACAGC
TTGCTGAACTTGTGCAATCTTGTGGAGCAACCGATAACCCTGATGTATCCTGGGTGACATTCCACGGATCAGATGTGATC
TGCAGACTGATCAGGTCAGCCAATGGTGGTGTTATTCCTTCATCGATCAGCGGAGAGAGTTTCCTCCCTAGCTTGTATGA
TGTCGCATTGATCGTTCGTCGATTCCTTGGCATTGGCACACTCCCTACAACCGAGCGCAATGGAGGTATTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30572.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis