Browse Element(s) Details


Os.27003.1.S2_a_at

Description gb:CB663807
DB_XREF= gi:29667532
DB_XREF=OSJNEd09C18.r
CLONE=OSJNEd09C18
TID=Os.27003.1
CNT=4
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.27003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0053G13.19), mRNA
FL= gb:AK119359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2860011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein
LOC_Os10g28580OsAffx.30572.2.S1_at11/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28580OsAffx.30576.2.S1_x_at1/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28610Os.15555.1.S1_at11/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.1.S1_x_at3/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.2.S1_x_at1/1110+14574800..14582384expressed protein
LOC_Os10g28620OsAffx.20335.1.S1_at11/1110+14590674..14590958hypothetical protein
LOC_Os10g28630Os.46891.1.S1_at11/1110+14592526..14595637Homocysteine S-methyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27003.1.S2_a_at--588--6251Chr10:14568295..14568319 (25 bp)
GATGGTCTAACATATTTTAGGCAAT
LOC_Os10g28600
Os.27003.1.S2_a_at--319--811Chr10:14568262..14568286 (25 bp)
ATGGGTCTTGAACCTGATCTAATTA
LOC_Os10g28600
Os.27003.1.S2_a_at--1135--10471Chr10:14568240..14568264 (25 bp)
TTACTTACAATTTGCTCATTGATGG
LOC_Os10g28600
Os.27003.1.S2_a_at--632--6191Chr10:14568155..14568179 (25 bp)
GGGAATTGTCCCGAACTTGTACACT
LOC_Os10g28600
Os.27003.1.S2_a_at--70--7231Chr10:14568148..14568172 (25 bp)
GTCCCGAACTTGTACACTTATAATT
LOC_Os10g28600
Os.27003.1.S2_a_at--466--351Chr10:14568129..14568153 (25 bp)
ATAATTCACTAATTCTCCACTTAGG
LOC_Os10g28600
Os.27003.1.S2_a_at--897--4751Chr10:14568091..14568115 (25 bp)
GCTGCTGAAGCTGGGAAAATGTATG
LOC_Os10g28600
Os.27003.1.S2_a_at--176--4851Chr10:14568062..14568086 (25 bp)
GCTACTGACGAAAGGCTGGAAGCCT
LOC_Os10g28600
Os.27003.1.S2_a_at--1143--3451Chr10:14568002..14568026 (25 bp)
CAGTGTTTCCGGCAGTACTGATAGT
LOC_Os10g28600
Os.27003.1.S2_a_at--57--9931Chr10:14567987..14568011 (25 bp)
TACTGATAGTGCCTATGCTGCCTAT
LOC_Os10g28600
Os.27003.1.S2_a_at--838--6571Chr10:14567954..14567978 (25 bp)
GATTGTTGGCGGGTGCCTACCCAAT
LOC_Os10g28600
Target Sequence 
GATGGTCTAACATATTTTAGGCAATTATTAGANATGGGTCTTGAACCTGATCTAATTACTTACAATTTGCTCATTGATGG
TCTTGGAAAATCAAAAAGATTAGAGGAAGCAGTNTCTCTATTCAATGAGATGCAGAAGAAGGGAATTGTCCCGAACTTGT
ACACTTATAATTCACTAATTCTCCACTTAGGAAAAGCAGGGAAGGCTGCTGAAGCTGGGAAAATGTATGAAGAGCTACTG
ACGAAAGGCTGGAAGCCTAACGTTTTCACNTATAACGCTCTTATTAGGGGNTACAGTGTTTCCGGCAGTACTGATAGTGC
CTATGCTGCCTATGGNCGGATGATTGTTGGCGGGTGCCTACCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27003.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis