Browse Element(s) Details


Os.52595.1.S1_at

Description gb:AK068242.1
DB_XREF= gi:32978260
TID=Os.52595.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149A17, full insert sequence.
FL= gb:AK068242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2857011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein
LOC_Os10g28560OsAffx.8119.1.S1_at11/1110+14535028..14535306hypothetical protein
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein
LOC_Os10g28580OsAffx.30572.2.S1_at11/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28580OsAffx.30576.2.S1_x_at1/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52595.1.S1_at--833--3671Chr10:14540983..14541007 (25 bp)
CTTTTTTACTGCCTCTTACAGAGAG
LOC_Os10g28570
Os.52595.1.S1_at--352--7291Chr10:14540956..14540980 (25 bp)
GTGCGCATCAACTGTATTTGTCCCT
LOC_Os10g28570
Os.52595.1.S1_at--189--2571Chr10:14540947..14540971 (25 bp)
AACTGTATTTGTCCCTTTTTGCTGA
LOC_Os10g28570
Os.52595.1.S1_at--65--10371Chr10:14540932..14540956 (25 bp)
TTTTTGCTGACCTTTGGCACTCTTT
LOC_Os10g28570
Os.52595.1.S1_at--554--8231Chr10:14540917..14540941 (25 bp)
GGCACTCTTTGGTGTTCTACTTGAG
LOC_Os10g28570
Os.52595.1.S1_at--170--651Chr10:14540890..14540914 (25 bp)
ATGCAGTTAGCATGATACTCCTGAT
LOC_Os10g28570
Os.52595.1.S1_at--1032--9771Chr10:14540806..14540830 (25 bp)
TAAGGTGAAACCATTCTACTTTAGA
LOC_Os10g28570
Os.52595.1.S1_at--308--10531Chr10:14540731..14540755 (25 bp)
TTCATTTAACTGTTCATCCAAAGGG
LOC_Os10g28570
Os.52595.1.S1_at--232--8351Chr10:14540707..14540731 (25 bp)
GGCTGTGCCAAATACACATGCCCAA
LOC_Os10g28570
Os.52595.1.S1_at--1114--8051Chr10:14540646..14540670 (25 bp)
GGAGAATCTTTCATTTTCACATCAA
LOC_Os10g28570
Os.52595.1.S1_at--961--7591Chr10:14540578..14540602 (25 bp)
GGGCACTTTTTTCATGCACATTGTT
LOC_Os10g28570
Target Sequence 
CTTTTTTACTGCCTCTTACAGAGAGCAGTGCGCATCAACTGTATTTGTCCCTTTTTGCTGACCTTTGGCACTCTTTGGTG
TTCTACTTGAGGGATGCAGTTAGCATGATACTCCTGATATAAGGTAGAGAAAGGGTTCTAGGTTCATAATTTAAAACATG
GGTAAATTATTTAAATTTAAGGTGAAACCATTCTACTTTAGAATTTTCAATATGCAGAGGGATTAAAGCCAATCCCTTTT
TGGAACTTTCAATTCATTTAACTGTTCATCCAAAGGGGCTGTGCCAAATACACATGCCCAAGCAAATGCTTAGAGATTTG
GATAACCTGAAAGCAAAGGAGAATCTTTCATTTTCACATCAATTAAGATTGAAACCAATGGACATGCAAGGATGGTTGAA
TTTTGGGGCACTTTTTTCATGCACATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis