Browse Element(s) Details


OsAffx.18427.1.S1_at

Description tigr:9638.m02420
TID=OsAffx.18427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2853011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28510Os.52300.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.30573.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.1264.1.S1_x_at1/1110+14502067..14509951expressed protein
LOC_Os10g28520OsAffx.30574.1.S1_at11/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28520OsAffx.30576.2.S1_x_at1/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein
LOC_Os10g28560OsAffx.8119.1.S1_at11/1110+14535028..14535306hypothetical protein
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18427.1.S1_at--376--4611Chr10:14519430..14519454 (25 bp)
GCAGGGGGTTCCATCGACCAGAAGC
LOC_Os10g28530
OsAffx.18427.1.S1_at--210--5851Chr10:14519415..14519439 (25 bp)
GACCAGAAGCTCGAGACGTTTTTGC
LOC_Os10g28530
OsAffx.18427.1.S1_at--420--1711Chr10:14519414..14519438 (25 bp)
ACCAGAAGCTCGAGACGTTTTTGCG
LOC_Os10g28530
OsAffx.18427.1.S1_at--101--3411Chr10:14519413..14519437 (25 bp)
CCAGAAGCTCGAGACGTTTTTGCGG
LOC_Os10g28530
OsAffx.18427.1.S1_at--1032--3391Chr10:14519412..14519436 (25 bp)
CAGAAGCTCGAGACGTTTTTGCGGG
LOC_Os10g28530
OsAffx.18427.1.S1_at--58--3991Chr10:14519404..14519428 (25 bp)
CGAGACGTTTTTGCGGGAGGTGGAG
LOC_Os10g28530
OsAffx.18427.1.S1_at--925--6211Chr10:14519361..14519385 (25 bp)
GAGGCGCTATGCGACGAGCTGTCCT
LOC_Os10g28530
OsAffx.18427.1.S1_at--1088--891Chr10:14519360..14519384 (25 bp)
AGGCGCTATGCGACGAGCTGTCCTG
LOC_Os10g28530
OsAffx.18427.1.S1_at--63--4131Chr10:14519357..14519381 (25 bp)
CGCTATGCGACGAGCTGTCCTGCCT
LOC_Os10g28530
OsAffx.18427.1.S1_at--1094--9291Chr10:14519312..14519336 (25 bp)
TCCGCGTGTGGCTGGCACCCATGGA
LOC_Os10g28530
OsAffx.18427.1.S1_at--804--3991Chr10:14519308..14519332 (25 bp)
CGTGTGGCTGGCACCCATGGACCGC
LOC_Os10g28530
Target Sequence 
GCAGGGGGTTCCATCGACCAGAAGCTCGAGACGTTTTTGCGGGAGGTGGAGGCCGCCGACGACGAGATGGAGGCGCTATG
CGACGAGCTGTCCTGCCTCCTCGTCTCCGCCTACCGCCTCCGCGTGTGGCTGGCACCCATGGACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis