Browse Element(s) Details


OsAffx.30574.1.S1_at

Description tigr:9638.m02419
TID=OsAffx.30574.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CCR4-associated factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2852011/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28470NANA10+14482798..14488760retrotransposon protein, putative, unclassified
LOC_Os10g28480NANA10+14491475..14492195hypothetical protein
LOC_Os10g28490OsAffx.6798.2.A1_at11/1110+14493236..14493959expressed protein
LOC_Os10g28510Os.52300.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.30573.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.1264.1.S1_x_at1/1110+14502067..14509951expressed protein
LOC_Os10g28520OsAffx.30574.1.S1_at11/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28520OsAffx.30576.2.S1_x_at1/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein
LOC_Os10g28560OsAffx.8119.1.S1_at11/1110+14535028..14535306hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30574.1.S1_at--524--5311Chr10:14512240..14512264 (25 bp)
GAAGGATGCCGACTCATTCGAAATT
LOC_Os10g28520
OsAffx.30574.1.S1_at--894--7131Chr10:14512265..14512289 (25 bp)
GTCATTGCATTCGTGAACTCTGAAG
LOC_Os10g28520
OsAffx.30574.1.S1_at--1009--691Chr10:14512365..14512389 (25 bp)
AGTTTACCCGGCTTATGGCGTCTTG
LOC_Os10g28520
OsAffx.30574.1.S1_at--1061--6071Chr10:14512399..14512423 (25 bp)
GAGTAATCCTAATGTATCCTGGGTG
LOC_Os10g28520
OsAffx.30574.1.S1_at--585--8071Chr10:14512433..14512457 (25 bp)
GGAGCACACGGGATCGCCAGCCTGA
LOC_Os10g28520
OsAffx.30574.1.S1_at--979--8431Chr10:14512496..14512520 (25 bp)
TGGCCTTCCTACGTCGAGCAACGGA
LOC_Os10g28520
OsAffx.30574.1.S1_at--1056--191Chr10:14512527..14512551 (25 bp)
ATTTCCCTGGTATGTATGATGTCGC
LOC_Os10g28520
OsAffx.30574.1.S1_at--728--51Chr10:14512552..14512576 (25 bp)
ATTGATTGTGCATAGATACCCTGAC
LOC_Os10g28520
OsAffx.30574.1.S1_at--961--6471Chr10:14512566..14512590 (25 bp)
GATACCCTGACATTGGCATACTTCC
LOC_Os10g28520
OsAffx.30574.1.S1_at--537--5031Chr10:14512709..14512733 (25 bp)
GCAGATCGTGGTGATTTCCCAGACA
LOC_Os10g28520
OsAffx.30574.1.S1_at--212--2211Chr10:14512731..14512755 (25 bp)
ACAAGCAGTCAGCTGTCCAAGGGCA
LOC_Os10g28520
Target Sequence 
GAAGGATGCCGACTCATTCGAAATTGTCATTGCATTCGTGAACTCTGAAGGAATGTTGGCATATGATTGTGTGTGGAAAT
TCTGCATCAGCTCCACACCACGTAGTGGCTGTCTGCATCCCCGACAGTTTACCCGGCTTATGGCGTCTTGTGGAGCAACG
AGTAATCCTAATGTATCCTGGGTGACATTCCACGGAGCACACGGGATCGCCAGCCTGATCAGCTCATTCTCTGCACCTCA
AGACCTTCCAAGCGACTGGCCTTCCTACGTCGAGCAACGGAGAGCATATTTCCCTGGTATGTATGATGTCGCATTGATTG
TGCATAGATACCCTGACATTGGCATACTTCCCACAACGGGGTGCAAAGGAGGCTTGTTTGATGTTGCCCGAGCTCTGGAC
CTGAACTTCATCAAGGACGACAATCCGGTAACCAGGGTTCTTCTTACTCTGAGATGCTACATGAGATTGGCAGATCGTGG
TGATTTCCCAGACAAGCAGTCAGCTGTCCAAGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis