Browse Element(s) Details


OsAffx.30573.1.S1_at

Description tigr:9638.m02418
TID=OsAffx.30573.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2851011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28460Os.28943.1.S1_x_at2/1110+14478938..14482178retrotransposon protein, putative, unclassified
LOC_Os10g28470NANA10+14482798..14488760retrotransposon protein, putative, unclassified
LOC_Os10g28480NANA10+14491475..14492195hypothetical protein
LOC_Os10g28490OsAffx.6798.2.A1_at11/1110+14493236..14493959expressed protein
LOC_Os10g28510Os.52300.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.30573.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.1264.1.S1_x_at1/1110+14502067..14509951expressed protein
LOC_Os10g28520OsAffx.30574.1.S1_at11/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28520OsAffx.30576.2.S1_x_at1/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30573.1.S1_at--933--7232Chr10:14524551..14524572 (22 bp)
GTCCCATGGTTATGCCCGCAAGGCG
NONE
OsAffx.30573.1.S1_at--1127--7991Chr10:14509680..14509704 (25 bp)
GGAGGCGACGTTTCTGTTCTACCAG
LOC_Os10g28510
OsAffx.30573.1.S1_at--106--9991Chr10:14509661..14509685 (25 bp)
TACCAGCAGCTCTTGTTCATCAATT
LOC_Os10g28510
OsAffx.30573.1.S1_at--69--7231Chr10:14509170..14509194 (25 bp)
GTCCCCAGCACTGAAACTTCTATAT
LOC_Os10g28510
OsAffx.30573.1.S1_at--398--2051Chr10:14509155..14509179 (25 bp)
ACTTCTATATCCCAAACTTGCTCTT
LOC_Os10g28510
OsAffx.30573.1.S1_at--888--4791Chr10:14509136..14509160 (25 bp)
GCTCTTAAAAGCAAGGGCCCTGCCC
LOC_Os10g28510
OsAffx.30573.1.S1_at--930--4531Chr10:14509120..14509144 (25 bp)
GCCCTGCCCTTTATCCAGAAAAAAG
LOC_Os10g28510
OsAffx.30573.1.S1_at--356--5031Chr10:14508294..14508373 (25 bp)
GCAGTGCGCATCAATATTTATGTTT
LOC_Os10g28510
OsAffx.30573.1.S1_at--896--10271Chr10:14508271..14508295 (25 bp)
TTTGCTGGTGGATGCATCTGGACAT
LOC_Os10g28510
OsAffx.30573.1.S1_at--753--8671Chr10:14508221..14508245 (25 bp)
TGTGTTCCTACTCTTAATCATATAA
LOC_Os10g28510
OsAffx.30573.1.S1_at--26--10031Chr10:14506657..14506681 (25 bp)
TAGAATGCTTTACAGGACCAACAAA
LOC_Os10g28510
Target Sequence 
GTCCCATGGTTATGCCCGCAAGGCGGGGGAAGTCTGGAGGCGACGTTTCTGTTCTACCAGCAGCTCTTGTTCATCAATTC
ATGCTGTTGTCCCCAGCACTGAAACTTCTATATCCCAAACTTGCTCTTAAAAGCAAGGGCCCTGCCCTTTATCCAGAAAA
AAGAGAGCAGTGCGCATCAATATTTATGTTTTGCTGGTGGATGCATCTGGACATCATTGAAAAGTGGTCTATAACTACAT
GTGTTCCTACTCTTAATCATATAATTCCTGATATAAGCTCAATTCATAGTATCTGGTATAAGCTGCACAGTAAGAAGAGC
AAAGTTGACAATTTGCCTCGAAGGAAACCAGTGATATATATCTGTTTTAGAATGCTTTACAGGACCAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis