Browse Element(s) Details


OsAffx.30576.2.S1_at

Description tigr:9638.m02421
TID=OsAffx.30576.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2854011/11CAF1 family ribonuclease containing protein
LOC_Os10g285901/11CAF1 family ribonuclease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28510Os.52300.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.30573.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.1264.1.S1_x_at1/1110+14502067..14509951expressed protein
LOC_Os10g28520OsAffx.30574.1.S1_at11/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28520OsAffx.30576.2.S1_x_at1/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein
LOC_Os10g28560OsAffx.8119.1.S1_at11/1110+14535028..14535306hypothetical protein
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein
LOC_Os10g28580OsAffx.30572.2.S1_at11/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28580OsAffx.30576.2.S1_x_at1/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30576.2.S1_at--167--5211Chr10:14521952..14522090 (25 bp)
GAATTGAAGAGCTGGATTCTGACTC
LOC_Os10g28540
OsAffx.30576.2.S1_at--970--8991Chr10:14521948..14522086 (25 bp)
TGAAGAGCTGGATTCTGACTCGTAC
LOC_Os10g28540
OsAffx.30576.2.S1_at--909--2771Chr10:14521946..14522084 (25 bp)
AAGAGCTGGATTCTGACTCGTACGA
LOC_Os10g28540
OsAffx.30576.2.S1_at--322--1371Chr10:14521945..14522083 (25 bp)
AGAGCTGGATTCTGACTCGTACGAA
LOC_Os10g28540
OsAffx.30576.2.S1_at--1015--1611Chr10:14521943..14521963 (21 bp)
AGCTGGATTCTGACTCGTACGAAAT
LOC_Os10g28540
OsAffx.30576.2.S1_at--398--3911Chr10:14521941..14521963 (23 bp)
CTGGATTCTGACTCGTACGAAATCA
LOC_Os10g28540
OsAffx.30576.2.S1_at--436--4172Chr10:14559681..14559810 (25 bp)
CGCCAGGATGATCAGATCCTTTGAC
LOC_Os10g28590
OsAffx.30576.2.S1_at--266--7991Chr10:14521625..14521754 (25 bp)
GGATGATCAGATCCTTTGACATCGT
LOC_Os10g28540
OsAffx.30576.2.S1_at--899--711Chr10:14521623..14521752 (25 bp)
ATGATCAGATCCTTTGACATCGTCA
LOC_Os10g28540
OsAffx.30576.2.S1_at--855--6431Chr10:14521621..14521641 (21 bp)
GATCAGATCCTTTGACATCGTCACA
LOC_Os10g28540
OsAffx.30576.2.S1_at--300--9651Chr10:14521619..14521641 (23 bp)
TCAGATCCTTTGACATCGTCACAAT
LOC_Os10g28540
Target Sequence 
GAATTGAAGAGCTGGATTCTGACTCGTACGAAATCATCGTCACATTTATGAACGCTGAAGGAATGTTGGCTTACAGTCGT
GCCTGGAAATTCTGCATCAGTTCCAGGGCAGACAATGGCTGTGTGCATCCTCAACAGTTTGCTAAGTTTATGGCATCTTG
TGGGGCATTGGGTGACCCCAACATATCTTGGGTGACATTTCACGGAGCACATGGGATCGCCAGGATGATCAGATCCTTTG
ACATCGTCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30576.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis