Browse Element(s) Details


Os.27003.1.S1_a_at

Description gb:AK119359.1
DB_XREF= gi:37988982
TID=Os.27003.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0053G13.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G05, full insert sequence.
FL= gb:AK119359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2860011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein
LOC_Os10g28580OsAffx.30572.2.S1_at11/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28580OsAffx.30576.2.S1_x_at1/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28610Os.15555.1.S1_at11/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.1.S1_x_at3/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.2.S1_x_at1/1110+14574800..14582384expressed protein
LOC_Os10g28620OsAffx.20335.1.S1_at11/1110+14590674..14590958hypothetical protein
LOC_Os10g28630Os.46891.1.S1_at11/1110+14592526..14595637Homocysteine S-methyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27003.1.S1_a_at--311--9731Chr10:14568900..14568924 (25 bp)
TCAAGAGCTTTGGAGTTTCACTAAA
LOC_Os10g28600
Os.27003.1.S1_a_at--604--10571Chr10:14568860..14568884 (25 bp)
TTCTTTGATTTGTGGGCTTGTTGAT
LOC_Os10g28600
Os.27003.1.S1_a_at--813--4751Chr10:14568817..14568841 (25 bp)
GCTGAAGGCTTGTTTGCTGAAATGA
LOC_Os10g28600
Os.27003.1.S1_a_at--136--5311Chr10:14568794..14568818 (25 bp)
GAAGGAACTCGGTTGTGGTCCAGAT
LOC_Os10g28600
Os.27003.1.S1_a_at--287--2211Chr10:14568759..14568783 (25 bp)
ACAACTTACTTCTTGATGCCATGGG
LOC_Os10g28600
Os.27003.1.S1_a_at--655--8071Chr10:14568614..14568638 (25 bp)
GGAGCAGGCTATTGATTTGTACTAC
LOC_Os10g28600
Os.27003.1.S1_a_at--51--8871Chr10:14568585..14568609 (25 bp)
TGATGAGCCAAGGTTTCTCACCCAC
LOC_Os10g28600
Os.27003.1.S1_a_at--774--5111Chr10:14568555..14568579 (25 bp)
GCACATATGGCCCTCTTCTTGATGG
LOC_Os10g28600
Os.27003.1.S1_a_at--127--7991Chr10:14568469..14568493 (25 bp)
GGATGCAAGGCCAATTGCACTATCT
LOC_Os10g28600
Os.27003.1.S1_a_at--1039--831Chr10:14568429..14568453 (25 bp)
ATGGACATCGAATAGCTGGTAATAC
LOC_Os10g28600
Os.27003.1.S1_a_at--898--5311Chr10:14568401..14568425 (25 bp)
GAAGGTCTGTCATTTGTTTCAGGAT
LOC_Os10g28600
Target Sequence 
TCAAGAGCTTTGGAGTTTCACTAAAAACTGGATTATATAATTCTTTGATTTGTGGGCTTGTTGATGAAAACCTAATAGAT
ATTGCTGAAGGCTTGTTTGCTGAAATGAAGGAACTCGGTTGTGGTCCAGATGAGTTTACTTACAACTTACTTCTTGATGC
CATGGGAAAGTCAATGCGGATAGAGGAAATGCTAAAAGTTCAAGAAGAGATGCATCGCAAGGGATATGAATCAACTTATG
TTACTTATAACACAATCATTTCAGGTCTTGTAAAGTCAAGAAGGTTGGAGCAGGCTATTGATTTGTACTACAACCTGATG
AGCCAAGGTTTCTCACCCACACCATGCACATATGGCCCTCTTCTTGATGGTCTGTTAAAAGCTGGAAGGATAGAAGATGC
AGAAAATCTTTTCAATGAGATGCTGGAGTATGGATGCAAGGCCAATTGCACTATCTANAATATACTACTGAATGGACATC
GAATAGCTGGTAATACAGAGAAGGTCTGTCATTTGTTTCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27003.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis