Browse Element(s) Details


OsAffx.24932.1.S1_x_at

Description tigr:9631.m00042
TID=OsAffx.24932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161495 hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g286103/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28610Os.15555.1.S1_at11/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.1.S1_x_at3/1110+14574800..14582384expressed protein
LOC_Os10g28610OsAffx.24932.2.S1_x_at1/1110+14574800..14582384expressed protein
LOC_Os10g28620OsAffx.20335.1.S1_at11/1110+14590674..14590958hypothetical protein
LOC_Os10g28630Os.46891.1.S1_at11/1110+14592526..14595637Homocysteine S-methyltransferase 2, putative, expressed
LOC_Os10g28640Os.39261.1.S1_at10/1110+14596619..14600381expressed protein
LOC_Os10g28650Os.35344.3.S1_x_at9/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650Os.35344.18.S1_x_at7/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650OsAffx.22940.5.S1_x_at2/1110+14601998..14607709transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24932.1.S1_x_at--584--5391Chr03:251320..251344 (25 bp)
GAAGCAGATAATGCCCATGCCCAGC
NONE
OsAffx.24932.1.S1_x_at--1113--272Chr10:14580160..14580184 (25 bp)
ATAGGCACACACAAACTGAAGCAGA
LOC_Os10g28610
OsAffx.24932.1.S1_x_at--599--5032Chr10:14579960..14579984 (25 bp)
GCAGTACTTCTGCAACAACAGCAAT
LOC_Os10g28610
OsAffx.24932.1.S1_x_at--480--251Chr03:251044..251068 (25 bp)
ATATCTGATTTGGAGCTACAGCTCT
NONE
OsAffx.24932.1.S1_x_at--49--4852Chr10:14579910..14579934 (25 bp)
GCTACAGCTCTCTAAAACACAGTTG
LOC_Os10g28610
OsAffx.24932.1.S1_x_at--174--3371Chr03:250934..250958 (25 bp)
CAGCCTGACGTTGAACCTGAAAGAA
NONE
OsAffx.24932.1.S1_x_at--582--5511Chr03:250898..250922 (25 bp)
GAAACTGACGTTGAAACTGAACAAG
NONE
OsAffx.24932.1.S1_x_at--631--6853Chr06:6844270..6844301 (24 bp)
GTTTGCAAAATTACACCCATCATCT
NONE
OsAffx.24932.1.S1_x_at--369--1812Chr03:253207..253231 (25 bp)
ACCCATCATCTGAAAAAGTAGCCAT
NONE
OsAffx.24932.1.S1_x_at--338--6971Chr03:250816..250840 (25 bp)
GTAGCCATGCATAACCAAAATTACA
NONE
OsAffx.24932.1.S1_x_at--574--2191Chr03:250794..250818 (25 bp)
ACACACCGTGGTCTCTAGTTTTGAA
NONE
Target Sequence 
GAAGCAGATAATGCCCATGCCCAGCTGCAAGATGAATGCAATAGGCACACACAAACTGAAGCAGATCTTCACAGGTTTAA
GAATCTTCATTCTCAGTTGGAAGAGGAAGTGATAAAGCTGACAGAAAATCTTGACAGATCAACAAAGGGACTGGAAGAGT
TGGAAAATGCAAAGTTAGACCTGGAAAACACATCAAGAGAGTTAAAAAGCACAATCTTAGATTTAAACTCTGAGAAGGAT
GCAGTACTTCTGCAACAACAGCAATCTTTGGCAAAAATATCTGATTTGGAGCTACAGCTCTCTAAAACACAGTTGGAACT
GAAGAATTCTGAACAGAAAATGCAGCTACTGGAGCTAGAAATCACACAGAAGAGTGAAAATATGAACAGCCTGACGTTGA
ACCTGAAAGAAGAAACTGAGAAGAAACTGACGTTGAAACTGAACAAGTTTCTGTTTTTGCATAACAGAAACTTGTTTGCA
AAATTACACCCATCATCTGAAAAAGTAGCCATGCATAACCAAAATTACACACCGTGGTCTCTAGTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24932.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis