Browse Element(s) Details


Os.46680.1.S1_x_at

Description gb:NM_196396.1
DB_XREF= gi:37534151
TID=Os.46680.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46680 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative anthocyanin 5-aromatic acyltransferase (OSJNBa0044A10.13), mRNA.
PROD=putative anthocyanin 5-aromatic acyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2629011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26230NANA10+13256386..13257693hypothetical protein
LOC_Os10g26240NANA10+13260623..13261245No apical meristem protein
LOC_Os10g26250Os.46681.1.S1_at10/1110+13262038..13262852hypothetical protein
LOC_Os10g26250OsAffx.20377.1.S1_x_at3/1110+13262038..13262852hypothetical protein
LOC_Os10g26250Os.17912.2.S1_x_at1/1110+13262038..13262852hypothetical protein
LOC_Os10g26260OsAffx.30540.1.S1_at10/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.17912.1.A1_at3/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.40386.1.S1_at1/1110+13263143..13265849hypothetical protein
LOC_Os10g26270OsAffx.18408.1.S1_at11/1110+13266555..13268534No apical meristem protein
LOC_Os10g26270OsAffx.20377.1.S1_x_at2/1110+13266555..13268534No apical meristem protein
LOC_Os10g26280Os.46783.1.S1_a_at11/1110+13269695..13275002origin recognition complex subunit 3, putative
LOC_Os10g26290Os.46680.1.S1_x_at11/1110+13280395..13282773Transferase family protein, expressed
LOC_Os10g26300NANA10+13293165..13293575hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46680.1.S1_x_at--237--4971Chr10:13280914..13280938 (25 bp)
GCACGGGTGGGTCTCCATCGCGCGC
LOC_Os10g26290
Os.46680.1.S1_x_at--883--2551Chr10:13280787..13280811 (25 bp)
AACTGCGTCGCGGTGTGCGCGGCGT
LOC_Os10g26290
Os.46680.1.S1_x_at--408--7731Chr10:13280645..13280669 (25 bp)
GGTGGCACGACAAGTTCGCGCGCAT
LOC_Os10g26290
Os.46680.1.S1_x_at--292--7571Chr10:13280613..13280637 (25 bp)
GGGCGCGCGATGATCATGGCCGGGT
LOC_Os10g26290
Os.46680.1.S1_x_at--722--411Chr10:13280601..13280625 (25 bp)
ATCATGGCCGGGTCGCCGTGGTTCC
LOC_Os10g26290
Os.46680.1.S1_x_at--760--1831Chr10:13280570..13280594 (25 bp)
ACGCGGTGGAGTTCGGCTTGGGCAG
LOC_Os10g26290
Os.46680.1.S1_x_at--800--3951Chr10:13280531..13280555 (25 bp)
CGGAGCTGGCGTCCATGAACCACGA
LOC_Os10g26290
Os.46680.1.S1_x_at--190--911Chr10:13280477..13280501 (25 bp)
AGGCTGGGTCGGTCCAGGCGTCGGT
LOC_Os10g26290
Os.46680.1.S1_x_at--538--3231Chr10:13280437..13280461 (25 bp)
CAAGATGCCGGCGTTCCGTGAGATG
LOC_Os10g26290
Os.46680.1.S1_x_at--670--1291Chr10:13280435..13280459 (25 bp)
AGATGCCGGCGTTCCGTGAGATGTT
LOC_Os10g26290
Os.46680.1.S1_x_at--418--9171Chr10:13280432..13280456 (25 bp)
TGCCGGCGTTCCGTGAGATGTTTGT
LOC_Os10g26290
Target Sequence 
GCACGGGTGGGTCTCCATCGCGCGCGCCAGCGGCCTCGCCGACGACGGCGGCGGCCCCGTGTTCGCCGTCTTCCTCGCGG
ACGCCCGCGCGCTCATGTCGCCGCCGGCGCCCGGCGCCTACGCCGGCAACTGCGTCGCGGTGTGCGCGGCGTCGCTGGAA
GGGGCGGAGCTCGCCGCCGGGGCGGACGCGCACGCGCACGCGCGGGCGGCCGCGGCCGTCGGGGGCGCCGTCGACGCCGC
GAGGCGCGACCCGCTCGGCGACCGCGCGCGGTGGCACGACAAGTTCGCGCGCATCCCGCCCGGGCGCGCGATGATCATGG
CCGGGTCGCCGTGGTTCCCGGCGTACGCGGTGGAGTTCGGCTTGGGCAGGCCGGCGGCGAGGGCGGAGCTGGCGTCCATG
AACCACGACGGGGAGGTGGTGCTCGTCGCCGGGAGGGAGGCTGGGTCGGTCCAGGCGTCGGTGGCGATCGCCGCCGACAA
GATGCCGGCGTTCCGTGAGATGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46680.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis