Browse Element(s) Details


Os.46681.1.S1_at

Description gb:CB667308
DB_XREF= gi:29671033
DB_XREF=OSJNEd14J07.r
CLONE=OSJNEd14J07
TID=Os.46681.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0044A10.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2625010/11hypothetical protein
LOC_Os01g237101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified
LOC_Os10g26220NANA10+13251184..13254022hypothetical protein
LOC_Os10g26230NANA10+13256386..13257693hypothetical protein
LOC_Os10g26240NANA10+13260623..13261245No apical meristem protein
LOC_Os10g26250Os.46681.1.S1_at10/1110+13262038..13262852hypothetical protein
LOC_Os10g26250OsAffx.20377.1.S1_x_at3/1110+13262038..13262852hypothetical protein
LOC_Os10g26250Os.17912.2.S1_x_at1/1110+13262038..13262852hypothetical protein
LOC_Os10g26260OsAffx.30540.1.S1_at10/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.17912.1.A1_at3/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.40386.1.S1_at1/1110+13263143..13265849hypothetical protein
LOC_Os10g26270OsAffx.18408.1.S1_at11/1110+13266555..13268534No apical meristem protein
LOC_Os10g26270OsAffx.20377.1.S1_x_at2/1110+13266555..13268534No apical meristem protein
LOC_Os10g26280Os.46783.1.S1_a_at11/1110+13269695..13275002origin recognition complex subunit 3, putative
LOC_Os10g26290Os.46680.1.S1_x_at11/1110+13280395..13282773Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46681.1.S1_at--240--4491Chr10:13262460..13262484 (25 bp)
GCCGGCATTGCTGGTGGATGGCGAG
LOC_Os10g26250
Os.46681.1.S1_at--404--4231Chr10:13262504..13262528 (25 bp)
CCGACAGCAACGACACACAGCTGGG
LOC_Os10g26250
Os.46681.1.S1_at--635--4051Chr10:13262646..13262670 (25 bp)
CGATGATGATCGACAGCGGTGCGAT
LOC_Os10g26250
Os.46681.1.S1_at--160--531Chr10:13262654..13262678 (25 bp)
ATCGACAGCGGTGCGATGGTGCAGA
LOC_Os10g26250
Os.46681.1.S1_at--663--51Chr10:13262700..13262724 (25 bp)
ATTCGACAATTAGGGCCCTCGTTCG
LOC_Os10g26250
Os.46681.1.S1_at--839--10071Chr10:13262710..13262734 (25 bp)
TAGGGCCCTCGTTCGAAAACCGCTG
LOC_Os10g26250
Os.46681.1.S1_at--375--4431Chr10:13262714..13262738 (25 bp)
GCCCTCGTTCGAAAACCGCTGGAAT
LOC_Os10g26250
Os.46681.1.S1_at--370--4171Chr10:13262748..13262772 (25 bp)
CCCTGGCTATAAATTCTTTGTCTTC
LOC_Os10g26250
Os.46681.1.S1_at--358--3692Chr10:13262763..13262787 (25 bp)
CTTTGTCTTCAAATTTTACTCGATT
LOC_Os10g26250
Os.46681.1.S1_at--847--3812Chr10:13262818..13262842 (25 bp)
CTCCATGTTTTTAGTTTCGTATAGA
LOC_Os10g26250
Os.46681.1.S1_at--539--10051Chr10:13262829..13262853 (25 bp)
TAGTTTCGTATAGACCTTTGGTAAT
NONE
Target Sequence 
GCCGGCATTGCTGGTGGATGGCGAGGACGGCTACGGCGCCATGGCCGACAGCAACGACACACAGCTGGGCGGCACGGAGT
TTGACACCGAACGAATCGCCGAAATGNTNNNNNTNNANNTTNGNNNATAACACCGTCCTTAAGTACAACGAAGTCTTTCC
TGACGACGACGAGGTGGTGGCGGCGCCGATGATGATCGACAGCGGTGCGATGGTGCAGAGGGATGTGATGGAGACGACCC
ATTCGACAATTAGGGCCCTCGTTCGAAAACCGCTGGAATTTCAAGTTTCCCTGGCTATAAATTCTTTGTCTTCAAATTTT
ACTCGATTTTGTAAGTTAATGTTCATATTTACTATTTGCTCCATGTTTTTAGTTTCGTATAGACCTTTGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis