Browse Element(s) Details


Os.46783.1.S1_a_at

Description gb:AB100408.1
DB_XREF= gi:28144536
GEN=ORC3
TID=Os.46783.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46783 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ORC3 mRNA for origin recognition complex3, complete cds.
PROD=origin recognition complex3
FL= gb:AB100408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2628011/11origin recognition complex subunit 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified
LOC_Os10g26220NANA10+13251184..13254022hypothetical protein
LOC_Os10g26230NANA10+13256386..13257693hypothetical protein
LOC_Os10g26240NANA10+13260623..13261245No apical meristem protein
LOC_Os10g26250Os.46681.1.S1_at10/1110+13262038..13262852hypothetical protein
LOC_Os10g26250OsAffx.20377.1.S1_x_at3/1110+13262038..13262852hypothetical protein
LOC_Os10g26250Os.17912.2.S1_x_at1/1110+13262038..13262852hypothetical protein
LOC_Os10g26260OsAffx.30540.1.S1_at10/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.17912.1.A1_at3/1110+13263143..13265849hypothetical protein
LOC_Os10g26260Os.40386.1.S1_at1/1110+13263143..13265849hypothetical protein
LOC_Os10g26270OsAffx.18408.1.S1_at11/1110+13266555..13268534No apical meristem protein
LOC_Os10g26270OsAffx.20377.1.S1_x_at2/1110+13266555..13268534No apical meristem protein
LOC_Os10g26280Os.46783.1.S1_a_at11/1110+13269695..13275002origin recognition complex subunit 3, putative
LOC_Os10g26290Os.46680.1.S1_x_at11/1110+13280395..13282773Transferase family protein, expressed
LOC_Os10g26300NANA10+13293165..13293575hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46783.1.S1_a_at--533--8151Chr10:13270402..13270426 (25 bp)
GGAAATTTCTGGTCTCTGTTGAGTG
LOC_Os10g26280
Os.46783.1.S1_a_at--1114--6111Chr10:13270382..13270406 (25 bp)
GAGTGTTTACCTTTTCATGAAATCG
LOC_Os10g26280
Os.46783.1.S1_a_at--1146--6771Chr10:13270231..13270367 (25 bp)
GTTAGCATTCTTCAATCTGCTTTAA
LOC_Os10g26280
Os.46783.1.S1_a_at--502--5291Chr10:13270191..13270215 (25 bp)
GAATGGTCCAGCTTGATCTAGTCAA
LOC_Os10g26280
Os.46783.1.S1_a_at--1104--8271Chr10:13270112..13270136 (25 bp)
GGCATCCATGCATGATACATCAATT
LOC_Os10g26280
Os.46783.1.S1_a_at--943--3171Chr10:13269855..13270116 (25 bp)
CAATTATGTGCAATCTAGCCCAAGA
LOC_Os10g26280
Os.46783.1.S1_a_at--880--7751Chr10:13269826..13269850 (25 bp)
GGTGATGTAATCAACCTTCATGACT
LOC_Os10g26280
Os.46783.1.S1_a_at--851--5731Chr10:13269805..13269829 (25 bp)
GACTGGTACATATCTTTCGATGGCA
LOC_Os10g26280
Os.46783.1.S1_a_at--947--8271Chr10:13269784..13269808 (25 bp)
GGCATTATCAATAGCGTGCATTCAA
LOC_Os10g26280
Os.46783.1.S1_a_at--874--2431Chr10:13269754..13269778 (25 bp)
AAAAGGAAACCGCACACATCTCCCT
LOC_Os10g26280
Os.46783.1.S1_a_at--292--371Chr10:13269719..13269743 (25 bp)
ATCAAAACCCGTTGCTGCGGAGAGT
LOC_Os10g26280
Target Sequence 
GGAAATTTCTGGTCTCTGTTGAGTGTTTACCTTTTCATGAAATCGTCTGTTTCAAGAATGTTAGCATTCTTCAATCTGCT
TTAATTGGAAATCCGAGAAGAATGGTCCAGCTTGATCTAGTCAAGTCACACAAACATCTTAAATGCTCTTGCTGCAGGAA
GAATGGAATTGCTGTGTCGGCATCCATGCATGATACATCAATTATGTGCAATCTAGCCCAAGAATATGGTGATGTAATCA
ACCTTCATGACTGGTACATATCTTTCGATGGCATTATCAATAGCGTGCATTCAAAAATCAAAAGGAAACCGCACACATCT
CCCTCGAAAAAGAAATCAAAACCCGTTGCTGCGGAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46783.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis