Browse Element(s) Details


Os.46710.1.S1_at

Description gb:AK064423.1
DB_XREF= gi:32974441
TID=Os.46710.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0056A15.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-C03, full insert sequence.
FL= gb:AK064423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1262011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12570Os.45976.1.S1_at5/1110+6761110..6770587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12570Os.45976.1.S1_x_at2/1110+6761110..6770587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12580OsAffx.20615.1.S1_at5/1110+6771483..6773096retrotransposon protein, putative, unclassified
LOC_Os10g12590OsAffx.20615.1.S1_at6/1110+6775059..6777486retrotransposon protein, putative, unclassified
LOC_Os10g12590OsAffx.22699.1.S1_x_at2/1110+6775059..6777486retrotransposon protein, putative, unclassified
LOC_Os10g12610OsAffx.20614.1.S1_x_at10/1110+6784721..6785701hypothetical protein
LOC_Os10g12620Os.46710.2.S1_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed
LOC_Os10g12620Os.46710.1.S1_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed
LOC_Os10g12620Os.46710.3.S1_x_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed
LOC_Os10g12630Os.27691.1.S1_x_at1/1110+6803887..6809628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12640NANA10+6817181..6817783hypothetical protein
LOC_Os10g12650NANA10+6818923..6819357hypothetical protein
LOC_Os10g12660NANA10+6820298..6822394retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46710.1.S1_at--866--5952Chr11:10526447..10526471 (25 bp)
GAGCAATTCCACTATCAGTATCCGC
NONE
Os.46710.1.S1_at--1162--9291Chr10:6788695..6788719 (25 bp)
TCCGCCTGCGGAATTCTTATCGAAA
LOC_Os10g12620
Os.46710.1.S1_at--175--8191Chr10:6788645..6788669 (25 bp)
GGAACCAGTTCATTTACATTGCAAA
LOC_Os10g12620
Os.46710.1.S1_at--453--8991Chr10:6788562..6788586 (25 bp)
TGAAGATACCATTCTCCACGCATAG
LOC_Os10g12620
Os.46710.1.S1_at--1088--2331Chr10:6788518..6788597 (25 bp)
AAAGCTTACCCAGGTGGTGACTCCG
LOC_Os10g12620
Os.46710.1.S1_at--27--3931Chr10:6788489..6788513 (25 bp)
CTGGCGCTGTGTGCTAGGTTTTCAA
LOC_Os10g12620
Os.46710.1.S1_at--1110--10071Chr10:6788475..6788499 (25 bp)
TAGGTTTTCAAGTCGAGGCTCCCGT
LOC_Os10g12620
Os.46710.1.S1_at--699--7451Chr10:6788452..6788476 (25 bp)
GTGTCTTTACGAGGGTATGCTCTCA
LOC_Os10g12620
Os.46710.1.S1_at--61--7171Chr10:6788416..6788440 (25 bp)
GTCTCGGCTCCTATGTGGTGGCACA
LOC_Os10g12620
Os.46710.1.S1_at--1158--4391Chr10:6788387..6788411 (25 bp)
GCCACTCGTCATTCTGCATTGTATA
LOC_Os10g12620
Os.46710.1.S1_at--351--1551Chr10:6788208..6788232 (25 bp)
AGCTTGTTGCTACTCTGTTTACAGA
LOC_Os10g12620
Target Sequence 
GAGCAATTCCACTATCAGTATCCGCCTGCGGAATTCTTATCGAAAAGAGGAACCAGGAAGAATTACTCGAGGAACCAGTT
CATTTACATTGCAAAGTAGTCTCATGGAATGGTATCAGGAGAGAAAATATGCCAGACAGGCTAAAGCCACTGCTGAAGAT
ACCATTCTCCACGCATAGTGGCTTTGATGACCATGAAAAAGCTTACCCAGGTGGTGACTCCGTATGCTGGCGCTGTGTGC
TAGGTTTTCAAGTCGAGGCTCCCGTGTCTTTACGAGGGTATGCTCTCAATTGAGGTGGCGTCTCGGCTCCTATGTGGTGG
CACACGAGGCCACTCGTCATTCTGCATTGTATATGCCTTTCGAGAAATGCTCAGGGGTCTTCCTGCTATCTCCACAAGGT
GGTGGGCTAGACGACCTGGGTTCAAAGCCTCACCCCTTCTAATTATTTGATATTAGGTTATTTCCTAATATTCGAGTTTT
TTTTTTTTTTAATATGCCTTTCGGAAGCAGCTTGTTGCTACTCTGTTTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis