Browse Element(s) Details


Os.46719.1.S1_at

Description gb:AK122169.1
DB_XREF= gi:37991815
TID=Os.46719.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0089D15.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148C16, full insert sequence.
FL= gb:AK122169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0828011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08250NANA10+4222822..4226151transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.47463.1.S1_x_at6/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.14491.2.S1_x_at5/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08269NANA10+4241881..4242388NA
LOC_Os10g08280Os.46719.1.S1_at11/1110+4244162..4245962expressed protein
LOC_Os10g08290OsAffx.18171.1.S1_at11/1110+4246986..4247479hypothetical protein
LOC_Os10g08290OsAffx.887.1.S1_x_at1/1110+4246986..4247479hypothetical protein
LOC_Os10g08300NANA10+4250350..4253395retrotransposon protein, putative, unclassified
LOC_Os10g08319Os.46718.1.S1_at11/1110+4263848..4269339Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46719.1.S1_at--768--5611Chr10:4245377..4245401 (25 bp)
GACAAGCGGTGCTCGTACAACGGCG
LOC_Os10g08280
Os.46719.1.S1_at--255--1631Chr10:4245407..4245431 (25 bp)
AGCGGCGGGATCTGCAACCTGTTCG
LOC_Os10g08280
Os.46719.1.S1_at--142--3471Chr10:4245487..4245511 (25 bp)
CATGGGCTTCGGCTAATAAGGTGAC
LOC_Os10g08280
Os.46719.1.S1_at--795--1032Chr10:4245505..4245529 (25 bp)
AGGTGACAGATCGACATGCATGCTC
LOC_Os10g08280
Os.46719.1.S1_at--949--4791Chr10:4245526..4245550 (25 bp)
GCTCGCTTCATTCCTTGCGTTAATT
LOC_Os10g08280
Os.46719.1.S1_at--937--9011Chr10:4245574..4245598 (25 bp)
TGCAATGCGGCTAAGCTGGCTGCAT
LOC_Os10g08280
Os.46719.1.S1_at--1101--8471Chr10:4245590..4245614 (25 bp)
TGGCTGCATGTAGTTGAGGCCCAGA
LOC_Os10g08280
Os.46719.1.S1_at--889--8331Chr10:4245688..4245712 (25 bp)
GGCTGATTTGTGTTGTTACCTGAGA
LOC_Os10g08280
Os.46719.1.S1_at--479--6471Chr10:4245769..4245793 (25 bp)
GATAACTTGTCATCTTTGCATGTCT
LOC_Os10g08280
Os.46719.1.S1_at--765--6651Chr10:4245811..4245835 (25 bp)
GTTGACTTCGTTGCAAATTCTTGGT
LOC_Os10g08280
Os.46719.1.S1_at--162--6891Chr10:4245861..4245885 (25 bp)
GTATATTGATCTTCGAGCCACACTA
LOC_Os10g08280
Target Sequence 
GACAAGCGGTGCTCGTACAACGGCGCCAGCAGCGGCGGGATCTGCAACCTGTTCGCGCGCAAGTTCCCGCCGGAGACGCT
GCAGCCGCTGCTCCGGTTGGCGCCCAAGGTCATGGGCTTCGGCTAATAAGGTGACAGATCGACATGCATGCTCGCTTCAT
TCCTTGCGTTAATTGGAAGAGATATGGCAAAGCATGCTGCAATGCGGCTAAGCTGGCTGCATGTAGTTGAGGCCCAGAGA
AAAATAATTTTCGTTTAATTATATTTCGTTCGAAAACATGTTGATCAGGTATATATAATTAATCTGTTTCTGGCTGATTT
GTGTTGTTACCTGAGAAATACACAGATTGGCTTTGACAGAACGAATGAACGATATTTTGTTTTGACAAAAATGATAACTT
GTCATCTTTGCATGTCTTATTTATGTGTGTATCAGTTGACTTCGTTGCAAATTCTTGGTCAGCGTAAGGTTAAACAACAT
GCATGTATATTGATCTTCGAGCCACACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis