Browse Element(s) Details


OsAffx.18171.1.S1_at

Description tigr:9638.m00697
TID=OsAffx.18171.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0829011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08250NANA10+4222822..4226151transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.47463.1.S1_x_at6/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.14491.2.S1_x_at5/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08269NANA10+4241881..4242388NA
LOC_Os10g08280Os.46719.1.S1_at11/1110+4244162..4245962expressed protein
LOC_Os10g08290OsAffx.18171.1.S1_at11/1110+4246986..4247479hypothetical protein
LOC_Os10g08290OsAffx.887.1.S1_x_at1/1110+4246986..4247479hypothetical protein
LOC_Os10g08300NANA10+4250350..4253395retrotransposon protein, putative, unclassified
LOC_Os10g08319Os.46718.1.S1_at11/1110+4263848..4269339Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18171.1.S1_at--462--8993Chr11:20867798..20867822 (25 bp)
TGAAGCCCGAGCGACGGGAACACCA
NONE
OsAffx.18171.1.S1_at--1151--7611Chr10:4247032..4247056 (25 bp)
GGGAACACCAGACGGCATCGAGTCA
LOC_Os10g08290
OsAffx.18171.1.S1_at--167--8271Chr10:4247045..4247069 (25 bp)
GGCATCGAGTCATCTACTACTGCAT
LOC_Os10g08290
OsAffx.18171.1.S1_at--21--2033Chr11:20867846..20867865 (20 bp)
ACTACTGCATCCATCTACTCAATTG
NONE
OsAffx.18171.1.S1_at--6--2811Chr10:4247115..4247139 (25 bp)
AAGATTCTCACGTCCAACAAGCATC
LOC_Os10g08290
OsAffx.18171.1.S1_at--1010--4953Chr11:20867742..20867915 (25 bp)
GCATCAAATCAAGCGTCAAGACACC
NONE
OsAffx.18171.1.S1_at--943--2753Chr11:20867908..20867932 (25 bp)
AAGACACCAAGCAATCCGCATCGAT
NONE
OsAffx.18171.1.S1_at--950--411Chr10:4247175..4247199 (25 bp)
ATCATCATCGCCAAGTTCCTACGAA
LOC_Os10g08290
OsAffx.18171.1.S1_at--227--9951Chr10:4247194..4247364 (25 bp)
TACGAACGGCCACGACACGCTTCAT
LOC_Os10g08290
OsAffx.18171.1.S1_at--540--511Chr10:4247375..4247399 (25 bp)
ATCGATTACGTCCTGTACGACGGCA
LOC_Os10g08290
OsAffx.18171.1.S1_at--312--3551Chr10:4247422..4247446 (25 bp)
CATCGATCACGTCATTTACAATGAT
LOC_Os10g08290
Target Sequence 
TGAAGCCCGAGCGACGGGAACACCAGACGGCATCGAGTCATCTACTACTGCATCCATCTACTCAATTGAGAGGAGAAGCA
CATGGTGCACAGGAGAATAAGATTCTCACGTCCAACAAGCATCAAATCAAGCGTCAAGACACCAAGCAATCCGCATCGAT
CATCATCGCCAAGTTCCTACGAACGGCCACGACACGCTTCATCGACGACAACATCGATTACGTCCTGTACGACGGCAACG
ACCGCGTCACCGATGACGGCATCGATCACGTCATTTACAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis