Browse Element(s) Details


Os.46718.1.S1_at

Description gb:NM_195010.1
DB_XREF= gi:37531379
TID=Os.46718.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46718 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Cytochrome P450 (OSJNBa0089D15.29), mRNA.
PROD=putative Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0831911/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08269NANA10+4241881..4242388NA
LOC_Os10g08280Os.46719.1.S1_at11/1110+4244162..4245962expressed protein
LOC_Os10g08290OsAffx.18171.1.S1_at11/1110+4246986..4247479hypothetical protein
LOC_Os10g08290OsAffx.887.1.S1_x_at1/1110+4246986..4247479hypothetical protein
LOC_Os10g08300NANA10+4250350..4253395retrotransposon protein, putative, unclassified
LOC_Os10g08319Os.46718.1.S1_at11/1110+4263848..4269339Cytochrome P450 family protein, expressed
LOC_Os10g08340OsAffx.8464.1.S1_at11/1110+4279230..4281428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08350Os.46306.1.S1_x_at8/1110+4290087..4293182transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46718.1.S1_at--300--3311Chr10:4268808..4268832 (25 bp)
CACATTATCAATGGGTAAAGCCTGT
LOC_Os10g08319
Os.46718.1.S1_at--876--9831Chr10:4268823..4268847 (25 bp)
TAAAGCCTGTGATGAGCTTGCCCAG
LOC_Os10g08319
Os.46718.1.S1_at--200--5931Chr10:4268836..4268860 (25 bp)
GAGCTTGCCCAGGTTGTTGGATCAA
LOC_Os10g08319
Os.46718.1.S1_at--792--31Chr10:4268925..4268949 (25 bp)
ATTGAGATTACATCCACCGGTTCCA
LOC_Os10g08319
Os.46718.1.S1_at--947--4351Chr10:4268947..4268971 (25 bp)
CCACTGTTACCACATCGAGCTAAGA
LOC_Os10g08319
Os.46718.1.S1_at--673--6231Chr10:4268970..4268994 (25 bp)
GATGGCGATGCAAATAATGGGTTAT
LOC_Os10g08319
Os.46718.1.S1_at--570--2412Chr11:26702844..26703101 (25 bp)
AAAAACATTTGGACAGAACCTGAGA
NONE
Os.46718.1.S1_at--749--5491Chr10:4269101..4269125 (25 bp)
GAACAATTGACTTCAGAGGTGGAGA
LOC_Os10g08319
Os.46718.1.S1_at--68--4331Chr10:4269139..4269163 (25 bp)
CCATTTGGTGCAGGCCGTCGAATCT
LOC_Os10g08319
Os.46718.1.S1_at--166--9711Chr10:4269227..4269251 (25 bp)
TCAAATGGAGACTACCGGTTGAGGT
LOC_Os10g08319
Os.46718.1.S1_at--934--1451Chr10:4269278..4269302 (25 bp)
AGAAGTTTGGATTGACTCTAGTAAA
LOC_Os10g08319
Target Sequence 
CACATTATCAATGGGTAAAGCCTGTGATGAGCTTGCCCAGGTTGTTGGATCAAGAAGAAGAATTGAAGAGTCTGAAATTG
GTCAATTGCCATATTTGCAAGCTGTCATAAAAGAGACATTGAGATTACATCCACCGGTTCCACTGTTACCACATCGAGCT
AAGATGGCGATGCAAATAATGGGTTATACAATACCTAATGGTACAAAAATATTGATAAATGTGTGGGCCATNGGTAGAGA
TAAAAACATTTGGACAGAACCTGAGAAGTTCATGCCAGAGAGNTTCCTTGATAGAACAATTGACTTCAGAGGTGGAGATT
TAGAGCTCATCCCATTTGGTGCAGGCCGTCGAATCTGNCCTGGAATGCCATTAGCNATTNGGATGGTGCATGTGGTTCTT
GCATCACTATTAATTCATTTCAAATGGAGACTACCGGTTGAGGTGGAAAGAAATGGAATTGATATGACAGAGAAGTTTGG
ATTGACTCTAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis