Browse Element(s) Details


Os.46729.1.S1_at

Description gb:AK119430.1
DB_XREF= gi:37989053
TID=Os.46729.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0087H07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-A03, full insert sequence.
FL= gb:AK119430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0478010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04750OsAffx.20760.1.S1_at10/1110+2262698..2263592F-box domain containing protein
LOC_Os10g04760OsAffx.20759.1.S1_at9/1110+2265117..2266872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04770OsAffx.20758.1.S1_at11/1110+2273167..2277200expressed protein
LOC_Os10g04780Os.46729.1.S1_at10/1110+2280854..2284863F-box domain containing protein, expressed
LOC_Os10g04790OsAffx.30280.1.S1_x_at11/1110+2291947..2292198hypothetical protein
LOC_Os10g04800Os.46728.1.S1_at5/1110+2301441..2301732hypothetical protein
LOC_Os10g04810OsAffx.31869.2.S1_at10/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.13933.1.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.5.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.4.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.3.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.1.S1_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46729.1.S1_at--173--10371Chr10:2281405..2281429 (25 bp)
TTTTTCCCCATACGTCACTGTTGAA
LOC_Os10g04780
Os.46729.1.S1_at--227--7991Chr10:2281326..2281350 (25 bp)
GGATGCATGCCAGTTATCAGTCATA
LOC_Os10g04780
Os.46729.1.S1_at--982--7291Chr10:2281284..2281308 (25 bp)
GTGCGCAGCTGAACACATGTTTCTT
LOC_Os10g04780
Os.46729.1.S1_at--748--5331Chr10:2281215..2281239 (25 bp)
GAAGTCGTCATTATCATCACAGCTT
LOC_Os10g04780
Os.46729.1.S1_at--516--4931Chr10:2281194..2281218 (25 bp)
GCTTGATCCAGGCTTTGAACTCTGA
LOC_Os10g04780
Os.46729.1.S1_at--865--2271Chr10:2281130..2281154 (25 bp)
AAATGAATTTGCTGGCTTGCCACTT
LOC_Os10g04780
Os.46729.1.S1_at--135--10691Chr10:2281114..2281138 (25 bp)
TTGCCACTTCATTTCCAGATTTCAG
LOC_Os10g04780
Os.46729.1.S1_at--692--5311Chr10:2281069..2281093 (25 bp)
GAAGGTTTGGTTACTTGCCGTATAT
LOC_Os10g04780
Os.46729.1.S1_at--902--8231Chr10:2281041..2281065 (25 bp)
GGCAAACCGCTGATGGCCATGAGTT
LOC_Os10g04780
Os.46729.1.S1_at--523--9011Chr10:2280948..2280972 (25 bp)
TGAATTTTGACACATGCTTGCCCAT
LOC_Os10g04780
Os.46729.1.S1_at--16--8191NONE
GGAACCTCATGCTTTGTTGTTGGTA
NONE
Target Sequence 
TTTTTCCCCATACGTCACTGTTGAAAACTTGGCAGCACAACTTCAACCAGAATTGGCGTGAACAAGGGATAGATTTGCTG
GATGCATGCCAGTTATCAGTCATAGCACTAATTAGGCTGATGTGCGCAGCTGAACACATGTTTCTTATGGGTTTTAAACC
CAGAACAGACATGCAGTTATTTGTTTCGTTGAAGTCGTCATTATCATCACAGCTTGATCCAGGCTTTGAACTCTGATGTT
TGTGAAATTTGTTAAATTGTGTGACTGATAGTGACAAATGAATTTGCTGGCTTGCCACTTCATTTCCAGATTTCAGTTGT
ATTTATGGGCATATGGGAAGGTTTGGTTACTTGCCGTATATATGGGCAAACCGCTGATGGCCATGAGTTGACGATTTATG
CTTTTGTAAGTTGTATGTATAGCTAGTAATTGCCTCATGAACTGTACTGAATCCTTTTGAATTTTGACACATGCTTGCCC
ATGAATATTAATCTATGATGGAGCTGGTGATGTATCTTTTGCACATTTCCTCGTGTTTGAGGAACCTCATGCTTTGTTGT
TGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis