Browse Element(s) Details


Os.4673.1.S1_a_at

Description gb:AK073241.1
DB_XREF= gi:32983264
TID=Os.4673.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative adrenodoxin precursor (OJ1567_G09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033003P09, full insert sequence.
FL= gb:AK073241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0193010/11Ferredoxin, 2Fe-2S, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein
LOC_Os07g01910Os.5376.1.S1_at11/117+554328..556672expressed protein
LOC_Os07g01920Os.14676.1.S1_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920Os.14676.1.S1_a_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01930Os.4673.1.S1_a_at10/117+561642..564353Ferredoxin, 2Fe-2S, putative, expressed
LOC_Os07g01940Os.9352.1.S1_a_at11/117+573863..580491expressed protein
LOC_Os07g01950Os.10404.1.S1_at11/117+581828..585086expressed protein
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4673.1.S1_a_at--936--5931Chr07:562994..563018 (25 bp)
GAGCAGACAATCAGTGTCCCTGTTG
LOC_Os07g01930
Os.4673.1.S1_a_at--1144--7231Chr07:563009..563033 (25 bp)
GTCCCTGTTGGAATGTCCATCTTAG
LOC_Os07g01930
Os.4673.1.S1_a_at--382--8711Chr07:563022..563046 (25 bp)
TGTCCATCTTAGAAGCTGCTCATGA
LOC_Os07g01930
Os.4673.1.S1_a_at--803--7351Chr07:563283..563307 (25 bp)
GTGAAGGTTCACTTGCGTGTTCAAC
LOC_Os07g01930
Os.4673.1.S1_a_at--1092--4651Chr07:563297..563321 (25 bp)
GCGTGTTCAACCTGTCATGTCATAG
LOC_Os07g01930
Os.4673.1.S1_a_at--468--3631Chr07:563479..563503 (25 bp)
CTTGCATTTGGACTTACAGAAACGT
LOC_Os07g01930
Os.4673.1.S1_a_at--46--1431NONE
AGAAACGTCTCGTCTTGGCTGTCAA
NONE
Os.4673.1.S1_a_at--149--5491Chr07:564038..564062 (25 bp)
GAACTTGATGGCATGCGACTGGCAT
LOC_Os07g01930
Os.4673.1.S1_a_at--77--10471Chr07:564062..564086 (25 bp)
TTACCAGCAGCTACACGAAACTTTG
LOC_Os07g01930
Os.4673.1.S1_a_at--931--5491Chr07:564078..564102 (25 bp)
GAAACTTTGCGGTGGATGGCTTTGT
LOC_Os07g01930
Os.4673.1.S1_a_at--630--6231Chr07:564092..564116 (25 bp)
GATGGCTTTGTACCAAAACCACACT
LOC_Os07g01930
Target Sequence 
GAGCAGACAATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATG
TGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGATCCAACAG
ATGAAGAAAATGATATGCTTGACCTTGCATTTGGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCA
GAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTACCAAAACCACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4673.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis