Browse Element(s) Details


Os.46735.1.S1_at

Description gb:AK120449.1
DB_XREF= gi:37990072
TID=Os.46735.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NBS-LRR type resistance protein (OSJNBb0072F04.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013101D04, full insert sequence.
FL= gb:AK120449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0409011/11NB-ARC domain containing protein, expressed
LOC_Os03g591464/11hypothetical protein
LOC_Os11g082304/11retrotransposon protein, putative, unclassified
LOC_Os02g298802/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04050Os.27408.1.S2_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04050Os.27408.1.S1_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04060OsAffx.30270.1.S1_at11/1110+1855157..1859683NB-ARC domain containing protein
LOC_Os10g04074Os.35046.2.S1_x_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.35046.1.S1_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.14086.1.S1_s_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.46478.1.S1_at10/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04090Os.46735.1.S1_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_s_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_x_at6/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04100NANA10+1880224..1880581hypothetical protein
LOC_Os10g04110Os.47753.1.S1_at11/1110+1881932..1886668NB-ARC domain containing protein, expressed
LOC_Os10g04120OsAffx.20767.1.S1_at11/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04120Os.33624.1.S1_at1/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04130Os.54237.1.S1_at11/1110+1897478..1899973expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46735.1.S1_at--747--67910Chr11:21272783..21272807 (25 bp)
GTTTTGCCCTTTCTGTTTGGTCCAT
NONE
Os.46735.1.S1_at--327--6876Chr11:21272797..21272821 (25 bp)
GTTTGGTCCATCATCCAAGCAGCAT
NONE
Os.46735.1.S1_at--1024--8117Chr11:21272824..21272848 (25 bp)
GGACTTCCTCCACCACATTGTGTAG
NONE
Os.46735.1.S1_at--151--738Chr11:21272900..21272924 (25 bp)
ATGTTCTGTTAGGAGCAGCTGCTAC
NONE
Os.46735.1.S1_at--169--2073Chr07:20149034..20149055 (22 bp)
ACTTGTTGGTCGCTTTGGCTATACA
NONE
Os.46735.1.S1_at--3--1171Chr10:1874586..1874610 (25 bp)
AGTCATATCTTCACATTTGCAGGTT
LOC_Os10g04090
Os.46735.1.S1_at--916--95310Chr11:21273144..21273168 (25 bp)
TCTAGTCTTAGAATTGGTGGTCCTT
NONE
Os.46735.1.S1_at--499--77311Chr12:10925690..10925714 (25 bp)
GGTGGTCCTTAAAACTCTGTGCTTT
NONE
Os.46735.1.S1_at--823--62514Chr12:10925767..10925791 (25 bp)
GATGGTCCTCAATACTCCATGTCAT
NONE
Os.46735.1.S1_at--859--9311Chr10:1874297..1874321 (25 bp)
TCGAGTGTCGTTTTGTTTGTTCGGC
LOC_Os10g04090
Os.46735.1.S1_at--1143--8791Chr10:1874280..1874304 (25 bp)
TGTTCGGCGGTGTGCATCTTAGTTA
LOC_Os10g04090
Target Sequence 
GTTTTGCCCTTTCTGTTTGGTCCATCATCCAAGCAGCATCTGGACTTCCTCCACCACATTGTGTAGCGCATATGTTTGGG
AGCTGGCTTGATGGAATTCATAATAATTTGAAATCACATGTTCTGTTAGGAGCAGCTGCTACTTGTTGGTCGCTTTGGCT
ATACAGGAATAATGTGGTTTTTGATAAAAAAGTCATATCTTCACATTTGCAGGTTATATATTCTCTTATCCATTGGCTTC
GTATATGGGCTATCCTACAGAAGCCTGATTCGCGGGATATGGTAGTTGCGGCATGTCAACATTTGGAGAAGGTGGTCAAG
GAGTTTTTTACCCAGGGATATGGGTGGTGATCTAGTCTTAGAATTGGTGGTCCTTAAAACTCTGTGCTTTTGGAGGAGAT
GGCCAAGGAGTTGTTCATGAGTGGCAATTTAGTCGTTAGATTGATGGTCCTCAATACTCCATGTCATTCTTTTTTCCTTT
CGAGTGTCGTTTTGTTTGTTCGGCGGTGTGCATCTTAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis