Browse Element(s) Details


Os.46737.1.S1_at

Description gb:AK119385.1
DB_XREF= gi:37989008
TID=Os.46737.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0023I19.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-B11, full insert sequence.
FL= gb:AK119385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0281411/11G-protein alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02780OsAffx.18095.1.S1_x_at11/1110+1092946..1094113hypothetical protein
LOC_Os10g02790OsAffx.425.1.S1_at11/1110+1099004..1100764transposon protein, putative, Mariner sub-class
LOC_Os10g02800OsAffx.18096.1.S1_at11/1110+1101004..1101811hypothetical protein
LOC_Os10g02814Os.46737.3.S1_x_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02814Os.46737.1.S1_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02830OsAffx.30247.1.S1_x_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02830OsAffx.30247.1.S1_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02840Os.46511.2.S1_x_at11/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02840Os.46511.1.S1_at10/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02850NANA10+1129527..1132563retrotransposon protein, putative, unclassified
LOC_Os10g02860NANA10+1133184..1137423retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0001789biological_processG-protein signaling, coupled to S1P second messenger (sphingosine kinase activating)
GO:0006499biological_processN-terminal protein myristoylation
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0008219biological_processcell death
GO:0009738biological_processabscisic acid mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009845biological_processseed germination
GO:0010119biological_processregulation of stomatal movement
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
GO:0016247molecular_functionchannel regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46737.1.S1_at--184--9751Chr10:1115060..1115084 (25 bp)
TAATCTCTGTTAGTCGCGTGGGTTA
LOC_Os10g02814
Os.46737.1.S1_at--868--10051Chr10:1115070..1115094 (25 bp)
TAGTCGCGTGGGTTAATCCTGTCCG
LOC_Os10g02814
Os.46737.1.S1_at--1073--9851Chr10:1115154..1115178 (25 bp)
TACACACCGTCGCTGTCACGATGGC
LOC_Os10g02814
Os.46737.1.S1_at--1086--4131Chr10:1115164..1115188 (25 bp)
CGCTGTCACGATGGCGACGCCAGTA
LOC_Os10g02814
Os.46737.1.S1_at--189--4671Chr10:1115205..1115229 (25 bp)
GCGTGAGCGATGTGGCATCCGACCA
LOC_Os10g02814
Os.46737.1.S1_at--506--5791Chr10:1115240..1115264 (25 bp)
GACGAAGACGGCCTTGCCGCTCAAC
LOC_Os10g02814
Os.46737.1.S1_at--936--8811Chr10:1115359..1115383 (25 bp)
TGATCCCACCGGTGACGGTCACGAG
LOC_Os10g02814
Os.46737.1.S1_at--11--2171Chr10:1115447..1115471 (25 bp)
ACAGCCTGCGTCTACGTATGTACTA
LOC_Os10g02814
Os.46737.1.S1_at--640--7711Chr10:1115504..1115528 (25 bp)
GGGTGACCGTATGCATGTATGCATA
LOC_Os10g02814
Os.46737.1.S1_at--226--6671Chr10:1115530..1115554 (25 bp)
GTTGCTGACTTAAAACTTGGCCACG
LOC_Os10g02814
Os.46737.1.S1_at--622--2391Chr10:1115542..1115566 (25 bp)
AAACTTGGCCACGACTATGATCTTG
LOC_Os10g02814
Target Sequence 
TAATCTCTGTTAGTCGCGTGGGTTAATCCTGTCCGCCTCCCACGCGCGAAGCCACGCCGCCACGTCGCCGGCGGCGAGCG
ACCGCGCCGCCGCGTACACACCGTCGCTGTCACGATGGCGACGCCAGTAGCGGCGCCGCTCGACCGCGTGAGCGATGTGG
CATCCGACCACGACGGCGCCGACGAAGACGGCCTTGCCGCTCAACGCCGCCGCCGTGTGGCTGATGGCCGNCGCCTCCGC
CGGCGGGAGGGGCGCCACGGCCACCTCCTCCGTCATCGCCACCAGCAAGTCCGTCACCGTGATCCCACCGGTGACGGTCA
CGAGAGCTCGCCGCCGGCCGCCGCTCGCACGGCGGCGCGGGAAGCCACGCCGGCGACCCTGCCCACCACAGCCTGCGTCT
ACGTATGTACTATGAGTACAAGATGGAGACGTATGTGACATTGGGGGTGACCGTATGCATGTATGCATATGTTGCTGACT
TAAAACTTGGCCACGACTATGATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis