Browse Element(s) Details


Os.46757.1.S1_s_at

Description gb:AK121006.1
DB_XREF= gi:37990629
TID=Os.46757.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046I03, full insert sequence.
FL= gb:AK121006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5128011/11Survival protein SurE containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51260Os.38391.2.S1_at11/111+29796437..29798347Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g51270NANA1+29802387..29802680hypothetical protein
LOC_Os01g51280Os.46757.1.S1_s_at11/111+29805955..29809697Survival protein SurE containing protein, expressed
LOC_Os01g51290Os.25899.1.S1_a_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51290Os.25899.2.S1_s_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51300Os.12711.1.S1_at11/111+29827969..29833800WD-40 repeat protein MSI4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46757.1.S1_s_at--1004--5151Chr01:29809125..29809149 (25 bp)
GCAACCTAAAACTCGCAAGACATGT
LOC_Os01g51280
Os.46757.1.S1_s_at--1113--10171Chr01:29809149..29809173 (25 bp)
TATACATTCCCTAGCTGTCGTAGTT
LOC_Os01g51280
Os.46757.1.S1_s_at--220--1231Chr01:29809170..29809194 (25 bp)
AGTTCTTTCTCACCTTTGTTTATCG
LOC_Os01g51280
Os.46757.1.S1_s_at--345--3051Chr01:29809198..29809222 (25 bp)
AATCGGTTTGATTTGCTTGTTAGTC
LOC_Os01g51280
Os.46757.1.S1_s_at--588--4931Chr01:29809212..29809236 (25 bp)
GCTTGTTAGTCTTTTGCAGTTCATA
LOC_Os01g51280
Os.46757.1.S1_s_at--264--3451Chr01:29809228..29809252 (25 bp)
CAGTTCATATTTGCCCACTGCAATC
LOC_Os01g51280
Os.46757.1.S1_s_at--265--6751Chr01:29809263..29809287 (25 bp)
GTTCATGTTCTCTGATGATTGCCAG
LOC_Os01g51280
Os.46757.1.S1_s_at--848--8731Chr01:29809340..29809364 (25 bp)
TGTAACCACGTAGGGCAATGCATCT
LOC_Os01g51280
Os.46757.1.S1_s_at--380--10771Chr01:29809367..29809391 (25 bp)
TTGATGAAATACTTGCCTCCTGCCA
LOC_Os01g51280
Os.46757.1.S1_s_at--391--691Chr01:29809501..29809525 (25 bp)
ATGACCTGATGTAACCTGATGCAAT
LOC_Os01g51280
Os.46757.1.S1_s_at--109--191Chr01:29809533..29809557 (25 bp)
ATTTATAGTGTATCCCCTTACTCCA
LOC_Os01g51280
Target Sequence 
GCAACCTAAAACTCGCAAGACATGTATACATTCCCTAGCTGTCGTAGTTCTTTCTCACCTTTGTTTATCGGTTAATCGGT
TTGATTTGCTTGTTAGTCTTTTGCAGTTCATATTTGCCCACTGCAATCTTTATTTTTTGTTCATGTTCTCTGATGATTGC
CAGTTTTTTTTTTATCATGTGAAATGATTTAGTGCTGGANACCCTACAGTTTGGATGTAACCACGTAGGGCAATGCATCT
ACTTGATGAAATACTTGCCTCCTGCCACCACCACTATTTTTTTTAGTGTGGTTTGTTCCAGTAAGGTGTTGTATTCAGCA
TTGGATGGATGAATATTGATTTTTTTCCCCATCTGGGAGATGGCCGACAAAGTATCATGACCTGATGTAACCTGATGCAA
TCCTAGCAATTTATAGTGTATCCCCTTACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46757.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis