Browse Element(s) Details


Os.4676.1.S1_at

Description gb:AK100776.1
DB_XREF= gi:32985985
TID=Os.4676.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504D03.20 (P0504D03.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120C10, full insert sequence.
FL= gb:AK100776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3303010/11Brix domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32990NANA1+18443658..18447995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33000Os.2117.1.S1_s_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.1.S1_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_x_at10/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_at3/111+18451780..18455740expressed protein
LOC_Os01g33009Os.25448.1.A1_at4/111+18457438..18457945NA
LOC_Os01g33009OsAffx.27522.1.S1_x_at2/111+18457438..18457945NA
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed
LOC_Os01g33050Os.2120.1.S1_a_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.2.S1_x_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.1.S1_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33060Os.45981.1.S1_at11/111+18490755..18500776HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4676.1.S1_at--960--6391Chr01:18468385..18468409 (25 bp)
GATCTAGTAGTTAGGCGACACCGGT
LOC_Os01g33030
Os.4676.1.S1_at--836--10091Chr01:18468374..18468398 (25 bp)
TAGGCGACACCGGTATCCAGTTGAA
LOC_Os01g33030
Os.4676.1.S1_at--410--1771Chr01:18468366..18468390 (25 bp)
ACCGGTATCCAGTTGAAAGCTTGAA
LOC_Os01g33030
Os.4676.1.S1_at--586--1851Chr01:18468141..18468165 (25 bp)
ACGAAGGATCCAGTGCATGGCAAGC
LOC_Os01g33030
Os.4676.1.S1_at--82--6371Chr01:18468135..18468159 (25 bp)
GATCCAGTGCATGGCAAGCTGGGCA
LOC_Os01g33030
Os.4676.1.S1_at--968--4331NONE
CCAGACCAGCAAATCGCAAAGATGA
NONE
Os.4676.1.S1_at--211--6291Chr01:18467988..18468012 (25 bp)
GATGAGTTTATCAAACGATGTCAAG
LOC_Os01g33030
Os.4676.1.S1_at--1012--2431Chr01:18467930..18467954 (25 bp)
AACAAGGACCACTCAAAGAAGCAAA
LOC_Os01g33030
Os.4676.1.S1_at--446--1251Chr01:18467905..18467929 (25 bp)
AGATAAATCCCGAGTGAAGAAGCTG
LOC_Os01g33030
Os.4676.1.S1_at--810--10091Chr01:18467639..18467663 (25 bp)
TATCTGTGATGGTTGGTGAATTTCC
LOC_Os01g33030
Os.4676.1.S1_at--835--151Chr01:18467620..18467644 (25 bp)
ATTTCCCCCATCTACTTGCGAAATT
LOC_Os01g33030
Target Sequence 
GATCTAGTAGTTAGGCGACACCGGTATCCAGTTGAAAGCTTGAAGAAAGAAGCAATGAAGACTGCTGATCATGCTAAGAA
GATGAAAAATGTCACGAAGGATCCAGTGCATGGCAAGCTGGGCAAGGTCTACATTCCAGACCAGCAAATCGCAAAGATGA
GTTTATCAAACGATGTCAAGGGGTTGAAGAGGGAGCGTCGTGAAGCCAAGAAAAACAAGGACCACTCAAAGAAGCAAAAG
ATAAATCCCGAGTGAAGAAGCTGAAGAAGTTATTTTTAGTTGGGAACTATCAGGTTGGGTTAAGGATTTTTGGTCATAAC
TGGTTGGGCTGTTGTGTTTACCAAGTGGAAGTCACCTTGCGTTATATTGAGTGGTAAATAGTTAATGAAGAAACATCCTG
TAAACCCTTNTAATGGCTTCCACAACAATATTGACCATGCCAGTGAGCATGGAATTTTGAGTAGCTATATGTTCTGAGAA
TTTTGTTCTACAATTCTGATTTCTTATCTGTGATGGTTGGTGAATTTCCCCCATCTACTTGCGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis