Browse Element(s) Details


Os.46788.1.S1_a_at

Description gb:AY224551.1
DB_XREF= gi:29367653
TID=Os.46788.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46788 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
PROD=DP TF
FL= gb:AY224551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3042010/11Transcription factor E2F/dimerisation partner family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30380OsAffx.30609.1.S1_at11/1110+15460336..15463074Cytochrome P450 family protein
LOC_Os10g30390OsAffx.20305.1.S1_at11/1110+15466886..15470494Cytochrome P450 family protein, expressed
LOC_Os10g30399NANA10+15475440..15475719NA
LOC_Os10g30410Os.46533.1.S1_at11/1110+15477261..15481625Cytochrome P450 family protein, expressed
LOC_Os10g30420Os.46788.1.S1_a_at10/1110+15483705..15488395Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os10g30430OsAffx.20304.1.S1_at11/1110+15491598..15492137heavy metal-associated domain containing protein
LOC_Os10g30440OsAffx.30610.1.S1_at11/1110+15494235..15494615hypothetical protein
LOC_Os10g30450OsAffx.6821.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_s_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30460Os.29992.2.S1_x_at3/1110+15501344..15502451hypothetical protein
LOC_Os10g30460OsAffx.7866.1.S1_x_at1/1110+15501344..15502451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000082biological_processG1/S transition of mitotic cell cycle
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46788.1.S1_a_at--317--3471Chr10:15486336..15486360 (25 bp)
CAGTGGAAGGGCTTGCCTCGGACAA
LOC_Os10g30420
Os.46788.1.S1_a_at--509--2391Chr10:15485392..15485416 (25 bp)
AAACTTGGCACAGCGAAACGAGCAG
LOC_Os10g30420
Os.46788.1.S1_a_at--180--1871Chr10:15485375..15485399 (25 bp)
ACGAGCAGCTTTATGGTTCAGGAAA
LOC_Os10g30420
Os.46788.1.S1_a_at--969--7851Chr10:15485361..15485385 (25 bp)
GGTTCAGGAAATGCTCCTTCAGGAG
LOC_Os10g30420
Os.46788.1.S1_a_at--730--4311Chr10:15485346..15485370 (25 bp)
CCTTCAGGAGGAGTGGCATTGCCAT
LOC_Os10g30420
Os.46788.1.S1_a_at--241--5611Chr10:15483836..15483860 (25 bp)
GATGATACGCAAGCCTGGGTTGGAA
LOC_Os10g30420
Os.46788.1.S1_a_at--280--2972Chr10:15483812..15483836 (25 bp)
AATGGAGGTGAGTGCTCAACCACAC
LOC_Os10g30420
Os.46788.1.S1_a_at--984--9711Chr10:15483797..15483821 (25 bp)
TCAACCACACCTATCTATCATCAAT
LOC_Os10g30420
Os.46788.1.S1_a_at--870--3071Chr10:15483775..15483799 (25 bp)
AATCACCCCAAGTTGCGAGGCCAAA
LOC_Os10g30420
Os.46788.1.S1_a_at--466--1931Chr10:15483751..15483775 (25 bp)
ACGGAGTTAGACTACCAACATCGCC
LOC_Os10g30420
Os.46788.1.S1_a_at--157--1091Chr10:15483705..15483729 (25 bp)
AGGGCGTGTCAAGCATGAACATTAG
NONE
Target Sequence 
CAGTGGAAGGGCTTGCCTCGGACAAGTATGAGCGATGTTGAAGAATTGAAGACAGAGATCATCGGACTGAAAGGTAGGAT
CGACAAGAAAAATGCATATTTGCAGGAGTTAGAAGATCAATTTGTAGGTCTTCAAAACTTGGCACAGCGAAACGAGCAGC
TTTATGGTTCAGGAAATGCTCCTTCAGGAGGAGTGGCATTGCCATTTATATTGGTGCAGACACGTCCTCATGCTACAGTA
GAAGTGGAGATATCAGAAGATATGCAGCTGGTGCATTTTGATTTCAATAGCACTCCATTTGAACTGCATGACGATTCCTT
TGTACTGAAAGCATTGGGGTTCTCTGGCAAAGAACCAGATGATACGCAAGCCTGGGTTGGAAATGGAGGTGAGTGCTCAA
CCACACCTATCTATCATCAATCACCCCAAGTTGCGAGGCCAAACGGAGTTAGACTACCAACATCGCCCCCTATTCCCGGT
ATACTTAAAGGGCGTGTCAAGCATGAACATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46788.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis