Browse Element(s) Details


Os.46812.1.S1_at

Description gb:AK110508.1
DB_XREF= gi:32995717
TID=Os.46812.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein (OSJNBa0034L04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-F10, full insert sequence.
FL= gb:AK110508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3845011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38402NANA10+20185594..20192256retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38420NANA10+20198629..20199851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38440OsAffx.18568.1.S1_at10/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38440OsAffx.14234.1.S1_at2/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38450Os.46812.2.S1_x_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38450Os.46812.1.S1_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38460NANA10+20214943..20215845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38470Os.5441.1.S1_at11/1110+20221525..20222677glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.7794.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.2612.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_x_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46812.1.S1_at--151--2371Chr10:20208551..20208575 (25 bp)
AAACCATCTGTCATGCGGCATACCT
LOC_Os10g38450
Os.46812.1.S1_at--898--10031Chr10:20208501..20208525 (25 bp)
TAGAGTTCCTTGACCTCTCATTGAA
LOC_Os10g38450
Os.46812.1.S1_at--808--7811Chr10:20208328..20208352 (25 bp)
GGTCTATGTGGCTTTCCATTGAACA
LOC_Os10g38450
Os.46812.1.S1_at--107--2091Chr10:20208306..20208330 (25 bp)
ACATTTCATGCACAAGTTCTTCACT
LOC_Os10g38450
Os.46812.1.S1_at--790--2811Chr10:20208293..20208317 (25 bp)
AAGTTCTTCACTTGCATCGGATGAG
LOC_Os10g38450
Os.46812.1.S1_at--818--8091Chr10:20208248..20208272 (25 bp)
GGACCAGTATCTATCCTTCTGTGTA
LOC_Os10g38450
Os.46812.1.S1_at--824--8191Chr10:20208187..20208211 (25 bp)
GGAATGTTCTTTTTCAGTGGAACCT
LOC_Os10g38450
Os.46812.1.S1_at--983--4291Chr10:20208165..20208189 (25 bp)
CCTTAAGGTATGCTGTTTTCGGCTT
LOC_Os10g38450
Os.46812.1.S1_at--692--10291Chr10:20208149..20208173 (25 bp)
TTTCGGCTTTGTTGATTGCATACAG
LOC_Os10g38450
Os.46812.1.S1_at--515--6191Chr10:20208078..20208102 (25 bp)
GAGGAACTACTGCTTAGTATCTGTA
LOC_Os10g38450
Os.46812.1.S1_at--914--1591Chr10:20208053..20208077 (25 bp)
AGCTGTGGTTTCTTAATGTACCTTC
LOC_Os10g38450
Target Sequence 
AAACCATCTGTCATGCGGCATACCTAAAAACATTGGTAATACGAAAAATCTAGAGTTCCTTGACCTCTCATTGAACTAAC
TTTCAGGAGCCATTCCTCCAAGCCTTGCTGATATATCTACTCTTGACATTCTAAATCTCTCGAATAATCATCTATCAGGT
AAGATACCCACTGGGAATCAACTTCAAACCCTCAGTGACCCATCAATATACCACAACAATTATGGTCTATGTGGCTTTCC
ATTGAACATTTCATGCACAAGTTCTTCACTTGCATCGGATGAGAGATTTTGTAGAAAATGCGAGGACCAGTATCTATCCT
TCTGTGTAATGGCTGGAGTGGTTTTCGGGTTTTGGGTATGGTTTGGAATGTTCTTTTTCAGTGGAACCTTAAGGTATGCT
GTTTTCGGCTTTGTTGATTGCATACAGTGTAAGGTTATGCAGAAGGTGTACTGTATTAATCAATTTCTTTCAAGAGGAAC
TACTGCTTAGTATCTGTAAGCTGTGGTTTCTTAATGTACCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis