Browse Element(s) Details


Os.46813.2.S1_x_at

Description gb:NM_195906.1
DB_XREF= gi:37533171
TID=Os.46813.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46813 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative laccase (OSJNBa0045C13.15), mRNA.
PROD=putative laccase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2061011/11Multicopper oxidase family protein, expressed
LOC_Os01g626001/11laccase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.1.S1_x_at2/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.2.S1_x_at1/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20590OsAffx.30463.1.S1_at11/1110+10045464..10047228hypothetical protein
LOC_Os10g20600Os.38168.2.S1_x_at11/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.2.S1_at10/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.1.S1_at7/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18185.1.S1_s_at4/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18311.1.S1_at3/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38368.1.S1_s_at2/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20610Os.46813.2.S1_x_at11/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20610Os.46813.1.S1_at10/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20610Os.46813.2.S1_at10/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20619NANA10+10076232..10076576NA
LOC_Os10g20630Os.20462.1.S1_at11/1110+10079769..10087133Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os10g20640NANA10+10088174..10088437hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46813.2.S1_x_at--89--5151Chr10:10061615..10061639 (25 bp)
GCAACCTGAAGGAGTCCATCGTGGT
LOC_Os10g20610
Os.46813.2.S1_x_at--769--2572Chr01:36563932..36564069 (24 bp)
AACGTGAACAACGTCTCGTTCCACA
LOC_Os01g62600
Os.46813.2.S1_x_at--1024--6111Chr10:10061461..10061485 (25 bp)
GAGGGCGTACAACTACACGGACCAG
LOC_Os10g20610
Os.46813.2.S1_x_at--1152--8611Chr10:10061342..10061366 (25 bp)
TGGTGTTCCAGAGCACGGCGATGCT
LOC_Os10g20610
Os.46813.2.S1_x_at--518--3351Chr10:10061283..10061307 (25 bp)
CACGACGTGTTCTTGCTGGCGCAGG
LOC_Os10g20610
Os.46813.2.S1_x_at--750--8471Chr10:10061267..10061291 (25 bp)
TGGCGCAGGGCATCGGCATCTACGA
LOC_Os10g20610
Os.46813.2.S1_x_at--178--9691Chr10:10061219..10061243 (25 bp)
TCAACCTGGTGAACCCGCCGAGGAA
LOC_Os10g20610
Os.46813.2.S1_x_at--642--7291Chr10:10061187..10061211 (25 bp)
GTGCTCGTCCCCAATCTTGGCTGGG
LOC_Os10g20610
Os.46813.2.S1_x_at--506--7591Chr10:10061165..10061189 (25 bp)
GGGCAGCCGTCCGATTTGTCGCCGA
LOC_Os10g20610
Os.46813.2.S1_x_at--130--4151Chr10:10061146..10061170 (25 bp)
CGCCGACAACCCAGGTGCATATAGG
LOC_Os10g20610
Os.46813.2.S1_x_at--793--3251Chr10:10061140..10061164 (25 bp)
CAACCCAGGTGCATATAGGAGTATT
LOC_Os10g20610
Target Sequence 
GCAACCTGAAGGAGTCCATCGTGGTGGCGAACGTGAACAACGTCTCGTTCCACATCCCCGCCGCGGCGGCGACGCCGATC
CTGGAGGCGCACTACTACCACCGCCTCCACGCCGGCGCCGGCGAGGAGGAGGAGGAGCTCGCCGAGCGGCCGCCGAGGGC
GTACAACTACACGGACCAGGCGCTGACGCCGTTCGGGCCGGAGGAGATGCGGCTGGAGGCGACGTCGAGGGCGGTGGTGA
CGCGGCGGTTCAGGCACGGCGCGACGGTGGACGTGGTGTTCCAGAGCACGGCGATGCTGCAGGGGGACTCGAACCCGATG
CACCTGCACGGCCACGACGTGTTCTTGCTGGCGCAGGGCATCGGCATCTACGACGCGGCCAGGGATGAGGGCAAGTTCAA
CCTGGTGAACCCGCCGAGGAAGAACACCGTGCTCGTCCCCAATCTTGGCTGGGCAGCCGTCCGATTTGTCGCCGACAACC
CAGGTGCATATAGGAGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46813.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis