Browse Element(s) Details


Os.46823.2.S1_x_at

Description gb:NM_197776.1
DB_XREF= gi:37536911
TID=Os.46823.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46823 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (OSJNBa0027P10.18), mRNA.
PROD=putative 3-deoxy-D-arabino-heptulosonate7-phosphate synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4148011/11Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein
LOC_Os10g41470Os.12785.1.S1_at11/1110+21958726..2195969760S ribosomal protein L27, putative, expressed
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed
LOC_Os10g41534Os.47036.1.S1_s_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.28292.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.50294.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.11453.1.S1_x_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46823.2.S1_x_at--568--4811Chr10:21961590..21961614 (25 bp)
GCTCATGTTGAATTCCTTCGTGGTA
LOC_Os10g41480
Os.46823.2.S1_x_at--149--8591Chr10:21961570..21961594 (25 bp)
TGGTATTTCCAACCCTCTAGGTGTA
LOC_Os10g41480
Os.46823.2.S1_x_at--623--7371Chr10:21961143..21961167 (25 bp)
GTGAGTGACAAGCTCGAACCTTCAG
LOC_Os10g41480
Os.46823.2.S1_x_at--476--811Chr10:21961050..21961074 (25 bp)
ATGGGTGCTGAGAACACGCGCGTTA
LOC_Os10g41480
Os.46823.2.S1_x_at--1162--4631Chr10:21961031..21961055 (25 bp)
GCGTTAAGCTCCCACATATGATCAG
LOC_Os10g41480
Os.46823.2.S1_x_at--448--271Chr10:21961016..21961040 (25 bp)
ATATGATCAGAGCAGTCCGCCAAGC
LOC_Os10g41480
Os.46823.2.S1_x_at--359--4171Chr10:21960999..21961023 (25 bp)
CGCCAAGCTGGGTTGATTGTCACTT
LOC_Os10g41480
Os.46823.2.S1_x_at--407--391Chr10:21960945..21960969 (25 bp)
ATCAGCGCACCATGTGGTCTCAAGA
LOC_Os10g41480
Os.46823.2.S1_x_at--603--6131Chr10:21960576..21960600 (25 bp)
GAGGGCTTTCTTCGATGTCCATGAG
LOC_Os10g41480
Os.46823.2.S1_x_at--6--1411Chr10:21960475..21960499 (25 bp)
AGACGGTGACCCTTGATGATCTCAG
LOC_Os10g41480
Os.46823.2.S1_x_at--378--9011Chr10:21960418..21960442 (25 bp)
TGAATGCATCGCAGTCGCTTGAACT
LOC_Os10g41480
Target Sequence 
GCTCATGTTGAATTCCTTCGTGGTATTTCCAACCCTCTAGGTGTAAAGGTGAGTGACAAGCTCGAACCTTCAGAGCTTGT
TAAATTGTGTGAGATTTTGAATCCTCACAACAAGCCCGGAAGACTGACAATCATCACAAGAATGGGTGCTGAGAACACGC
GCGTTAAGCTCCCACATATGATCAGAGCAGTCCGCCAAGCTGGGTTGATTGTCACTTGGGTCAGTGATCCCATGCATGGG
AACACCATCAGCGCACCATGTGGTCTCAAGACAAGATCATTCGACGCGATCAGGTGCGAGCTGAGGGCTTTCTTCGATGT
CCATGAGCAAGAGGGAAGCTACCCTGGAGGGATTCACCTGGAGATGACAGGGCAGAACGTTACAGAGTGCATTGGTGGAT
CCAAGACGGTGACCCTTGATGATCTCAGCTCTCGCTACCGCACGCACTGCGACCCCAGGCTGAATGCATCGCAGTCGCTT
GAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46823.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis