Browse Element(s) Details


Os.46847.1.S1_at

Description gb:AK063564.1
DB_XREF= gi:32973582
TID=Os.46847.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNAa0029P06.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F07, full insert sequence.
FL= gb:AK063564.1 gb:AK108171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0520011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05170OsAffx.30290.1.S1_at11/1110+2508119..2508601serine threonine kinase, putative
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05200Os.46847.1.S1_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05200Os.46847.2.S1_x_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05210Os.11061.1.S1_at11/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05210Os.46074.1.A1_at6/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05220Os.31936.1.S1_at11/1110+2542990..2548420tRNA-guanine transglycosylases, various specificities family protein, expressed
LOC_Os10g05230Os.10464.1.S1_at11/1110+2551663..2556201Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46847.1.S1_at--53--8451Chr10:2535397..2535421 (25 bp)
GGCCAGCAAGATGATTGGACTTCAA
LOC_Os10g05200
Os.46847.1.S1_at--1039--1331Chr10:2535433..2535457 (25 bp)
AGAGAGTATTTACATCTTGCTGTGT
LOC_Os10g05200
Os.46847.1.S1_at--796--3631Chr10:2535448..2535472 (25 bp)
CTTGCTGTGTAATATGCTGCCATGA
LOC_Os10g05200
Os.46847.1.S1_at--175--4791Chr10:2535463..2535487 (25 bp)
GCTGCCATGACGACCATTTTCTAGT
LOC_Os10g05200
Os.46847.1.S1_at--1040--10051Chr10:2535484..2535508 (25 bp)
TAGTAACATTTCAGCCTCTTGCCAA
LOC_Os10g05200
Os.46847.1.S1_at--9--4471Chr10:2535497..2535521 (25 bp)
GCCTCTTGCCAATAATAGTCCTGTC
LOC_Os10g05200
Os.46847.1.S1_at--610--10051Chr10:2535512..2535536 (25 bp)
TAGTCCTGTCGGGATTGGTAGACAT
LOC_Os10g05200
Os.46847.1.S1_at--767--6791Chr10:2535537..2535561 (25 bp)
GTTATAAGACTGACTCTGAGCATGT
LOC_Os10g05200
Os.46847.1.S1_at--741--8671Chr10:2535586..2535610 (25 bp)
TGTGTGCTCCTCAAATGCATGTATG
LOC_Os10g05200
Os.46847.1.S1_at--106--3011Chr10:2535599..2535623 (25 bp)
AATGCATGTATGGTACTTCAACTGC
LOC_Os10g05200
Os.46847.1.S1_at--345--1992Chr11:12534978..12535002 (25 bp)
ACTGCTGGTTTATATGATACTCCTA
NONE
Target Sequence 
GGCCAGCAAGATGATTGGACTTCAATATTGAAACAAAGAGAGTATTTACATCTTGCTGTGTAATATGCTGCCATGACGAC
CATTTTCTAGTAACATTTCAGCCTCTTGCCAATAATAGTCCTGTCGGGATTGGTAGACATGTTATAAGACTGACTCTGAG
CATGTATATGAATGCTTTTGTTAATCAGTTGTGTGCTCCTCAAATGCATGTATGGTACTTCAACTGCTGGTTTATATGAT
ACTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis