Browse Element(s) Details


Os.46852.1.S1_at

Description gb:AK107529.1
DB_XREF= gi:32992738
TID=Os.46852.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0027P10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G08, full insert sequence.
FL= gb:AK107529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4143011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein
LOC_Os10g41470Os.12785.1.S1_at11/1110+21958726..2195969760S ribosomal protein L27, putative, expressed
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46852.1.S1_at--870--2451Chr10:21940368..21940392 (25 bp)
AACAATGCCTACTTCGCGAGGGTGG
LOC_Os10g41430
Os.46852.1.S1_at--269--8891Chr10:21940424..21940448 (25 bp)
TGAGGTGGACTTCCTCTTTGGCATC
LOC_Os10g41430
Os.46852.1.S1_at--852--1631Chr10:21940506..21940530 (25 bp)
AGCGAGATGACCTACCTGGAGCAGC
LOC_Os10g41430
Os.46852.1.S1_at--392--4051Chr10:21940571..21940595 (25 bp)
CGATCAGGACGATGCCGGCTGCCAT
LOC_Os10g41430
Os.46852.1.S1_at--932--391Chr10:21940633..21940657 (25 bp)
ATCAGCTCGCCGTCTGAATGTTCAG
LOC_Os10g41430
Os.46852.1.S1_at--598--1371Chr10:21940682..21940706 (25 bp)
AGAGCTCTTCTTTTTTGTCACTGGA
LOC_Os10g41430
Os.46852.1.S1_at--22--8011Chr10:21940704..21940728 (25 bp)
GGATGTGGTGTCAATTTGCCTTTCT
LOC_Os10g41430
Os.46852.1.S1_at--722--3491Chr10:21940827..21940851 (25 bp)
CATGGTTCATGGATGGGTCAGCTTC
LOC_Os10g41430
Os.46852.1.S1_at--817--7691Chr10:21940841..21940865 (25 bp)
GGGTCAGCTTCTTGGGATATTTTTT
LOC_Os10g41430
Os.46852.1.S1_at--480--10371Chr10:21940861..21940885 (25 bp)
TTTTTTCGCCATTGTTCGTTCGATG
LOC_Os10g41430
Os.46852.1.S1_at--71--1571Chr10:21940913..21940937 (25 bp)
AGCTTTGGGATCTTGCCATTGTTTA
LOC_Os10g41430
Target Sequence 
AACAATGCCTACTTCGCGAGGGTGGGAGGCATCAGCTTGATGGAGATGAATTATCTTGAGGTGGACTTCCTCTTTGGCAT
CGCCTTCGACCTCAATGTCACGCCGGCTGCCTTCGCCTCCTACTGCGCCGTGCTGCAGAGCGAGATGACCTACCTGGAGC
AGCCGCCCGCCGTCGATCTCCCCAGGCTGCACTGCTGTCCGTCCGATCAGGACGATGCCGGCTGCCATCACAAGCAGCAG
CAGCAGCAGCAACAACAGCAGCAGCATCAGCTCGCCGTCTGAATGTTCAGGAGTTCAGAATCAATGAGAAGTTCAGAGCT
CTTCTTTTTTGTCACTGGATGTGGTGTCAATTTGCCTTTCTTTTTTNTTTTCTTTAATCTTTTTTTTACCGTGCTTGGTA
CATAGGTGTTAGTTAATTGTGGTTAGTGAAAGAATTGAGCTTTGATTAGATAGGTGGATCATGGTTCATGGATGGGTCAG
CTTCTTGGGATATTTTTTTCGCCATTGTTCGTTCGATGGATGGATGGATCATGGATAGGTGGATCAGCTTTGGGATCTTG
CCATTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis