Browse Element(s) Details


Os.4705.1.S1_at

Description gb:AK100313.1
DB_XREF= gi:32985522
TID=Os.4705.1
CNT=125
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.4705 (NCBI UniGene Cluster)
UG_TITLE=SS519 mRNA for elongation factor 2, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078M04, full insert sequence.
FL= gb:AK099493.1 gb:AK121453.1 gb:AK068869.1 gb:AK060953.1 gb:AK100313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3203011/11Elongation factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31960Os.37797.1.A1_s_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31960Os.37797.1.A1_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31970NANA2+18891680..18896222retrotransposon protein, putative, unclassified
LOC_Os02g31980OsAffx.12311.1.S1_x_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31980OsAffx.12311.1.S1_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31990NANA2+18897951..18898370hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_x_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32009NANA2+18903070..18903450NA
LOC_Os02g32020OsAffx.12312.1.S1_at9/112+18905133..18907062expressed protein
LOC_Os02g32030Os.4705.1.S1_at11/112+18911065..18915987Elongation factor 2, putative, expressed
LOC_Os02g32040NANA2+18917753..18918472AP2 domain containing protein
LOC_Os02g32050OsAffx.12313.1.S1_at10/112+18925775..18927141hypothetical protein
LOC_Os02g32060Os.7494.1.S1_at11/112+18930451..18933648Nudix hydrolase 13, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4705.1.S1_at--249--4951Chr02:18915483..18915507 (25 bp)
TCCTTTGGGTTCTCAAGCCAGCTTA
LOC_Os02g32030
Os.4705.1.S1_at--213--3471Chr02:18915537..18915561 (25 bp)
CAGTGTGTGTTCGACCATTGGGACA
LOC_Os02g32030
Os.4705.1.S1_at--665--711Chr02:18915561..18915585 (25 bp)
ATGATGACCTCTGATCCTCTTGAAG
LOC_Os02g32030
Os.4705.1.S1_at--816--911Chr02:18915595..18915619 (25 bp)
AGGCTTCAACCCTGGTGCAGGATAT
LOC_Os02g32030
Os.4705.1.S1_at--226--2691Chr02:18915675..18915699 (25 bp)
AAGCTCTAAATTTTTGGCCGCCGCA
LOC_Os02g32030
Os.4705.1.S1_at--57--3331Chr02:18915709..18915733 (25 bp)
CCGTTACCCTTACATGTTCTAGTTG
LOC_Os02g32030
Os.4705.1.S1_at--844--5451Chr02:18915748..18915772 (25 bp)
GAACTGCTTTCGTTGTCGTATTTCA
LOC_Os02g32030
Os.4705.1.S1_at--95--211Chr02:18915772..18915796 (25 bp)
ATTTCCCTTTTGTCGAATGCATGTG
LOC_Os02g32030
Os.4705.1.S1_at--298--9251Chr02:18915811..18915835 (25 bp)
TCCTATGTTCGCGTGCTACTGAGAA
LOC_Os02g32030
Os.4705.1.S1_at--17--5551Chr02:18915833..18915857 (25 bp)
GAAACTATTTTTACTCTGTCGTGAT
LOC_Os02g32030
Os.4705.1.S1_at--938--8171Chr02:18915869..18915893 (25 bp)
GGAACCTGGATCATCTTTTTGCTGT
LOC_Os02g32030
Target Sequence 
TCCTTTGGGTTCTCAAGCCAGCTTAGGGCTGCGACATCTGGCCAGGCCTTCCCCCAGTGTGTGTTCGACCATTGGGACAT
GATGACCTCTGATCCTCTTGAAGCTGGCTCGCAGGCTTCAACCCTGGTGCAGGATATCCGCAAGAGGAAGGGTCTCAAGG
AGCAGATGACTCCCCTCTCCGATTTCGAGGACAAGCTCTAAATTTTTGGCCGCCGCATGTGTTGTGCCGTTACCCTTACA
TGTTCTAGTTGGTCTACTGCTAAGAGAACTGCTTTCGTTGTCGTATTTCATTTCCCTTTTGTCGAATGCATGTGTTTCAC
ATCAACAATCCTATGTTCGCGTGCTACTGAGAAACTATTTTTACTCTGTCGTGATGTAACGGATGTGGAACCTGGATCAT
CTTTTTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis