Browse Element(s) Details


Os.47334.1.S1_at

Description gb:AK103204.1
DB_XREF= gi:32988413
TID=Os.47334.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122D05, full insert sequence.
FL= gb:AK103204.1 gb:AK060264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1446011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14430OsAffx.5815.1.S1_at10/118+8649865..8650807hypothetical protein
LOC_Os08g14440Os.5613.2.S1_x_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14440Os.5613.1.S1_s_at11/118+8662557..8666417ACT domain-containing protein, putative, expressed
LOC_Os08g14450Os.27634.1.S1_at11/118+8671612..8675214Sigma-70 region 2 family protein, expressed
LOC_Os08g14460Os.47334.1.S1_at11/118+8675237..8680095expressed protein
LOC_Os08g14470NANA8+8683308..8689463transposon protein, putative, unclassified
LOC_Os08g14480NANA8+8690093..8693327transposon protein, putative, unclassified
LOC_Os08g14490Os.49256.1.S1_at11/118+8697456..87025984'-phosphopantetheinyl transferase superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47334.1.S1_at--640--2271Chr08:8676021..8676164 (25 bp)
AAATGGCTTCCATAAAGGCCCGAAT
LOC_Os08g14460
Os.47334.1.S1_at--667--4851Chr08:8675950..8675974 (25 bp)
GCTACCGAGCGGGAACTTGAACTTG
LOC_Os08g14460
Os.47334.1.S1_at--765--10231Chr08:8675560..8675584 (25 bp)
TTTGTGTCGACCTTCACAGGCTTCA
LOC_Os08g14460
Os.47334.1.S1_at--231--2131Chr08:8675545..8675569 (25 bp)
ACAGGCTTCAGCTATCCAAGGCACG
LOC_Os08g14460
Os.47334.1.S1_at--162--8751Chr08:8675488..8675512 (25 bp)
TGTTTAGTAACCACCAAGCTTCCTC
LOC_Os08g14460
Os.47334.1.S1_at--1003--1531Chr08:8675472..8675496 (25 bp)
AGCTTCCTCCTTGGTAAACCTGTTG
LOC_Os08g14460
Os.47334.1.S1_at--872--9831Chr08:8675458..8675482 (25 bp)
TAAACCTGTTGTTGCCATGGTAGCA
LOC_Os08g14460
Os.47334.1.S1_at--690--2051Chr08:8675431..8675455 (25 bp)
ACTTCTAGGCGTTCTCTGTGTAGTA
LOC_Os08g14460
Os.47334.1.S1_at--711--4471Chr08:8675370..8675394 (25 bp)
GCCTGCCTCTGACTGTTACATGTAT
LOC_Os08g14460
Os.47334.1.S1_at--503--751Chr08:8675351..8675375 (25 bp)
ATGTATCGCACTTCTACTGTTAGGG
LOC_Os08g14460
Os.47334.1.S1_at--811--8071Chr08:8675241..8675265 (25 bp)
GGAGCTAGTTGTGGCTGTTGACCTC
LOC_Os08g14460
Target Sequence 
AAATGGCTTCCATAAAGGCCCGAATGACACAACTTCAAGATGCCCAAAAGGGTGCAGAAGTGACATCAGAAGCTACCGAG
CGGGAACTTGAACTTGAAGCTCAACTAGTTGAAGCTAGAAGCATTATCCAGGAGCAGGCATCCCTCATGTCCAAGCACTT
TACGAAGTCTGATAAACCAAGGAGGTTGAGTGGATTGGATGCTGAGCGTGAGGCGGTTGCAGCTCAGGAGGTGTAAATTA
TGTTTGTGTCGACCTTCACAGGCTTCAGCTATCCAAGGCACGTCACGATGCCAACCTTTCATCGAGGTCTCATGTGTTTA
GTAACCACCAAGCTTCCTCCTTGGTAAACCTGTTGTTGCCATGGTAGCATGACTTCTAGGCGTTCTCTGTGTAGTATTAT
GTGCAGGAGCATCTCCTCCGCTGTTGCTAACTGCCTGCCTCTGACTGTTACATGTATCGCACTTCTACTGTTAGGGAGAA
CAGATCAATGTAGCTATTATGGCCTACGNAATAGGCATCAATACCTTACTTACAGAATTGTTATTCCCTTCTTTCAAATG
TGGAGCTAGTTGTGGCTGTTGACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis