Browse Element(s) Details


Os.47361.1.S1_at

Description gb:NM_191476.1
DB_XREF= gi:34910035
GEN=P0413G02.19
TID=Os.47361.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47361 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative exonuclease (P0413G02.19), mRNA.
PROD=putative exonuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5694010/11XPG I-region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein
LOC_Os01g56930Os.19849.1.S1_at10/111+33213733..33219492aspartyl protease family protein, putative, expressed
LOC_Os01g56940Os.47361.1.S1_at10/111+33220231..33226565XPG I-region family protein, expressed
LOC_Os01g56949Os.5389.1.S1_s_at11/111+33227739..33229476expressed protein
LOC_Os01g56949Os.5389.1.S1_at11/111+33227739..33229476expressed protein
LOC_Os01g56960OsAffx.23812.1.S1_x_at11/111+33230123..33232511expressed protein
LOC_Os01g56969Os.5389.1.S1_at11/111+33234091..33235585hypothetical protein
LOC_Os01g56969Os.5389.1.S1_s_at4/111+33234091..33235585hypothetical protein
LOC_Os01g56980OsAffx.23812.1.S1_x_at11/111+33237110..33252182LOC495012 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47361.1.S1_at--278--2751Chr01:33225518..33225658 (25 bp)
AAGAACACTCTTCCTGTCAGATCTG
LOC_Os01g56940
Os.47361.1.S1_at--1115--1491Chr01:33225751..33225775 (25 bp)
AGCACTGACGTTCCTGATCTGAGCA
LOC_Os01g56940
Os.47361.1.S1_at--62--5951Chr01:33225771..33225795 (25 bp)
GAGCACATTTGCATACAGGCCTACA
LOC_Os01g56940
Os.47361.1.S1_at--1025--8092Chr01:33232208..33232232 (25 bp)
GGACCTCCTGACCTGAGAACATTTG
NONE
Os.47361.1.S1_at--868--2792Chr01:33232246..33232270 (25 bp)
AAGATCTACCACCAGCCGTTTTGAT
NONE
Os.47361.1.S1_at--390--2352Chr01:33232289..33232313 (25 bp)
AAAGCTATGTGCACTGCGGACAGCC
NONE
Os.47361.1.S1_at--257--4552Chr01:33232311..33232335 (25 bp)
GCCCTCCTGATATTAGCACATTCGA
NONE
Os.47361.1.S1_at--73--4512Chr01:33232355..33232379 (25 bp)
GCCGTCAGACGTTCAGATGGGAGCA
NONE
Os.47361.1.S1_at--818--10531NONE
TTCAGGGCTTATCAGTTCAGACTTC
NONE
Os.47361.1.S1_at--298--10532Chr01:33232637..33232661 (25 bp)
TTCAGACTTCAGAGCTCATCCGTAT
NONE
Os.47361.1.S1_at--162--2872Chr01:33232695..33232719 (25 bp)
AAGTGCTTTATCTTCTCGGTTTCCA
NONE
Target Sequence 
AAGAACACTCTTCCTGTCAGATCTGTTCTCAGACCTCCAGAACAGAGATTCGGTTGTACGGCTAAGAAGACTACTAGAGT
GCCTCTACAAAGCAGATTCTCAAGTGATGCTACAAACAGCACTGACGTTCCTGATCTGAGCACATTTGCATACAGGCCTA
CAACTGCTTCTGCTCATTCTGATCAGGGGAAGATCACAAGCAAAGCTACAGATGCTGCTGCTGGACCTCCTGACCTGAGA
ACATTTGCTTATGCACCAACAAGATCTACCACCAGCCGTTTTGATCAGAGTGAAAACACGCGCAAAGCTATGTGCACTGC
GGACAGCCCTCCTGATATTAGCACATTCGAATATAAACCCATGAAAAGCGCCGTCAGACGTTCAGATGGGAGCAAGTTTT
CAGGGCTTATCAGTTCAGACTTCAGAGCTCATCCGTATCTGCGCAATCAGAAGCACACATGTTCTGAAGGGAAGTGCTTT
ATCTTCTCGGTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis