Browse Element(s) Details


Os.47371.1.S1_at

Description gb:CR280501
DB_XREF= gi:44667067
DB_XREF=CR280501
CLONE=y608b03p3
TID=Os.47371.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0015F09b.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g306704/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g402501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g155601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g273201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30630NANA10+15615504..15615896hypothetical protein
LOC_Os10g30640Os.22913.1.S1_at10/1110+15616867..15620695Translin family protein, expressed
LOC_Os10g30650NANA10+15625290..15628562transposon protein, putative, unclassified
LOC_Os10g30660NANA10+15629205..15635359retrotransposon protein, putative, unclassified
LOC_Os10g30670Os.52659.1.S1_at7/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30670Os.47371.1.S1_at4/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30680OsAffx.30613.1.S1_x_at11/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_x_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30690OsAffx.8079.1.S1_at11/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.53952.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.8736.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30700OsAffx.8078.1.S1_at11/1110+15660389..15661583hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47371.1.S1_at--186--5252Chr11:5446661..5446685 (25 bp)
GAATCATGCTGGGACTGCAACTGTT
NONE
Os.47371.1.S1_at--338--9052Chr11:5446745..5446769 (25 bp)
TGCAGTTGGCGAAGATAATCCAGAA
NONE
Os.47371.1.S1_at--504--192Chr11:5446785..5446809 (25 bp)
ATTTCTCTAGGCATGTTTGGAGGGC
NONE
Os.47371.1.S1_at--1026--8272Chr11:5446807..5446831 (25 bp)
GGCATATTAATGCATCTGGCAGTGC
NONE
Os.47371.1.S1_at--570--3333Chr11:5446901..5446924 (24 bp)
CACTGAAGTGTGAACCTTGATGCAA
NONE
Os.47371.1.S1_at--327--6331NONE
GATGCAAGTGTTGAATGCAGCTTTT
NONE
Os.47371.1.S1_at--459--152Chr11:5446977..5447001 (25 bp)
ATTAGCTAGCTGCAAGCCCTCTATT
NONE
Os.47371.1.S1_at--966--2655Chr11:5446990..5447014 (25 bp)
AAGCCCTCTATTTTGGAACCTGATG
NONE
Os.47371.1.S1_at--275--6252Chr11:5447011..5447035 (25 bp)
GATGGAGGCTATGACTTCTTATGTA
NONE
Os.47371.1.S1_at--512--672Chr11:5447046..5447070 (25 bp)
ATGAAACTATGACTCTATTTTCCAT
NONE
Os.47371.1.S1_at--604--10591Chr11:5447065..5447089 (25 bp)
TTCCATGAATTTGGTTACGTGGCAT
NONE
Target Sequence 
GAATCATGCTGGGACTGCAACTGTTGGAGCCGNAGNAAGAGAATCATGGTGGGATTGCAGCTAGAGAGGAGAATAATGGT
GGTATTGCAGTTGGCGAAGATAATCCAGAAGAAACTTTGGCNAGAATTTCTCTAGGCATGTTTGGAGGGCATATTAATGC
ATCTGGCAGTGCAGNTGGAAACTACTCNCCTCCTTTGGAAGAGCTTGGCNCATTTTGATTTTAGAATGTTTGGAAGAATN
GCACTGAAGTGTGAACCTTGATGCAAGTGTTGAATGCAGCTTTTTTNGTTCTTGGATAGTTTNGTTTCATATTAGCTAGC
TGCAAGCCCTCTATTTTGGAACCTGATGGAGGCTATGACTTCTTATGTATTGAATTTCTATGAAACTATGACTCTATTTT
CCATGAATTTGGTTACGTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis