Browse Element(s) Details


Os.4739.1.S1_at

Description gb:AK111715.1
DB_XREF= gi:37988378
TID=Os.4739.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019D09, full insert sequence.
FL= gb:AK111715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3156011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31540OsAffx.22848.3.S1_x_at7/118+19370653..19376611retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31550OsAffx.17273.1.S1_at11/118+19383815..19384267hypothetical protein
LOC_Os08g31560Os.4739.1.S1_at11/118+19389266..19395937WD-40 repeat family protein, putative, expressed
LOC_Os08g31560Os.53126.1.S1_at1/118+19389266..19395937WD-40 repeat family protein, putative, expressed
LOC_Os08g31569Os.50979.1.S1_at10/118+19399320..19400307expressed protein
LOC_Os08g31580Os.5599.1.S1_x_at11/118+19414486..19416168DRE binding factor 1, putative, expressed
LOC_Os08g31580Os.5599.1.S1_at11/118+19414486..19416168DRE binding factor 1, putative, expressed
LOC_Os08g31590NANA8+19418166..19418456hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4739.1.S1_at--33--5591Chr08:19395344..19395368 (25 bp)
GAAATGTGCGTCTTTGCTGAGCTTA
LOC_Os08g31560
Os.4739.1.S1_at--1133--1531Chr08:19395363..19395387 (25 bp)
AGCTTAGCAGTCCTCCGATTATGTG
LOC_Os08g31560
Os.4739.1.S1_at--263--5131Chr08:19395399..19395423 (25 bp)
GCACAACTTGTGGAAGGCGCACTAA
LOC_Os08g31560
Os.4739.1.S1_at--36--8991Chr08:19395478..19395502 (25 bp)
TGAAGCTCATGAATGGCCCCGAACT
LOC_Os08g31560
Os.4739.1.S1_at--754--711Chr08:19395490..19395514 (25 bp)
ATGGCCCCGAACTGTAAAATTCTGT
LOC_Os08g31560
Os.4739.1.S1_at--358--3151Chr08:19395507..19395531 (25 bp)
AATTCTGTCCCTTTTGTCTAAAATG
LOC_Os08g31560
Os.4739.1.S1_at--1119--291Chr08:19395566..19395590 (25 bp)
ATAGCCGTCCTATTTCATTTTTCTC
LOC_Os08g31560
Os.4739.1.S1_at--521--3551Chr08:19395603..19395627 (25 bp)
CATATAGTTGTGGTATCCCGGTTCT
LOC_Os08g31560
Os.4739.1.S1_at--775--7851Chr08:19395614..19395638 (25 bp)
GGTATCCCGGTTCTTTGCAACGCAA
LOC_Os08g31560
Os.4739.1.S1_at--1057--5151Chr08:19395630..19395654 (25 bp)
GCAACGCAACGAGCATTGGCAACAA
LOC_Os08g31560
Os.4739.1.S1_at--170--7251Chr08:19395798..19395822 (25 bp)
GTCCTTGGGACACGTAGAAATTGCT
LOC_Os08g31560
Target Sequence 
GAAATGTGCGTCTTTGCTGAGCTTAGCAGTCCTCCGATTATGTGCTGCATAACTTGCACAACTTGTGGAAGGCGCACTAA
TAGTGAAAAGCTCATTAAAGAAATTTTGCTGCTTTAGTTTTTAGCTGCAGCACCNTGAAGCTCATGAATGGCCCCGAACT
GTAAAATTCTGTCCCTTTTGTCTAAAATGTCACTTAGGAACTGATGGAGGTAGATATATATGTATAGCCGTCCTATTTCA
TTTTTCTCCAAATCGATGTACATATAGTTGTGGTATCCCGGTTCTTTGCAACGCAACGAGCATTGGCAACAAAATAGCAA
GGATAAATTATGCCAGAAGTGGATGGTTCGGCACATCCGGAAGAAGATTTTAGCTCAATGATCATANGTGTTCCACTCGG
TNGTTCGGCTCTNGTTTATACAAGAACAGGGAATTTCCCAGCAGCGNCCTTTTCAGTCCTTGGGACACGTAGAAATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis