Browse Element(s) Details


Os.47392.1.A1_x_at

Description gb:CF277960
DB_XREF= gi:33655346
DB_XREF=14ETL--03-L01.b1
CLONE=14ETL--03-L01
TID=Os.47392.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47392 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0403010/11Histone H3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03990Os.16220.1.A1_at11/116+1628796..1632617aminotransferase ACS12, putative, expressed
LOC_Os06g04000Os.4299.1.S1_at11/116+1634099..1635030Peptidyl-prolyl cis-trans isomerase-like 3, putative, expressed
LOC_Os06g04010Os.10575.1.S1_at11/116+1635529..1639861GAGA binding protein-like family protein, expressed
LOC_Os06g04020Os.12784.1.S1_at10/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04020Os.49642.1.S1_x_at4/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04030Os.47392.1.A1_x_at10/116+1644415..1645324Histone H3, putative, expressed
LOC_Os06g04040Os.27000.1.S1_s_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04040Os.27000.2.S1_x_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04060OsAffx.15252.1.S1_at11/116+1666930..1669635hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47392.1.A1_x_at--474--5771Chr06:1644619..1644643 (25 bp)
GACGACGTGACGTGGTCAACTTGTT
LOC_Os06g04030
Os.47392.1.A1_x_at--284--4091Chr06:1644617..1644641 (25 bp)
CGACGTGACGTGGTCAACTTGTTGA
LOC_Os06g04030
Os.47392.1.A1_x_at--149--1911Chr06:1644615..1644639 (25 bp)
ACGTGACGTGGTCAACTTGTTGATT
LOC_Os06g04030
Os.47392.1.A1_x_at--1137--5751Chr06:1644611..1644635 (25 bp)
GACGTGGTCAACTTGTTGATTCCCC
LOC_Os06g04030
Os.47392.1.A1_x_at--1028--1891Chr06:1644610..1644634 (25 bp)
ACGTGGTCAACTTGTTGATTCCCCT
LOC_Os06g04030
Os.47392.1.A1_x_at--6--7511Chr06:1644608..1644632 (25 bp)
GTGGTCAACTTGTTGATTCCCCTCT
LOC_Os06g04030
Os.47392.1.A1_x_at--925--7811Chr06:1644606..1644630 (25 bp)
GGTCAACTTGTTGATTCCCCTCTCG
LOC_Os06g04030
Os.47392.1.A1_x_at--605--9711Chr06:1644604..1644628 (25 bp)
TCAACTTGTTGATTCCCCTCTCGCT
LOC_Os06g04030
Os.47392.1.A1_x_at--987--2511Chr06:1644602..1644626 (25 bp)
AACTTGTTGATTCCCCTCTCGCTTC
LOC_Os06g04030
Os.47392.1.A1_x_at--551--4291NONE
CCTCTCGCTTCCGCGTTTTAGATTT
NONE
Os.47392.1.A1_x_at--198--7891Chr06:1644502..1644526 (25 bp)
GGTTAAAGACTCAAAATCAAATGTT
LOC_Os06g04030
Target Sequence 
GACGACGTGACGTGGTCAACTTGTTGATTCCCCTCTCGCTTCCGCGTTTTAGATTTNGTTTTCATTANCAGCTTTGTAAT
AGGGTTNGGTCGGTTAATTAGTGTAAAANCAGGGTTCGGTTAAAGACTCAAAATCAAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47392.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis